Pairwise Alignments

Query, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

Subject, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  265 bits (676), Expect = 4e-76
 Identities = 127/162 (78%), Positives = 145/162 (89%)

Query: 8   PEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLT 67
           PE  L +LYR+HR WLE+WLRRR+GNAWDAADLSQDTFLR+LASAQP+A ++EPRAYL+T
Sbjct: 11  PELTLSSLYRDHRSWLESWLRRRLGNAWDAADLSQDTFLRVLASAQPIAQMQEPRAYLVT 70

Query: 68  VGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPAIRK 127
           VGKRLL NFHQRRSLEQAYL+ALA LPE  VPSPEQRW+LLETLQALDELLDGL   +R+
Sbjct: 71  VGKRLLVNFHQRRSLEQAYLNALASLPEACVPSPEQRWLLLETLQALDELLDGLPVLVRR 130

Query: 128 AFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHCLLAEL 169
           AFLWSQLEGLGY +I +RL V +R+VKRYMAQAYEHCLL +L
Sbjct: 131 AFLWSQLEGLGYRDIAERLDVSERTVKRYMAQAYEHCLLVDL 172