Pairwise Alignments

Query, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

Subject, 166 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 74.7 bits (182), Expect = 7e-19
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 8   PEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLT 67
           P+P     + EH   L     RR+ N   A DL+ DTF+R+L S    +++ +PRAYL  
Sbjct: 3   PQPPRRTGFFEHYEELIGTWTRRLRNRQQAEDLAHDTFVRVLESKS--SEVEQPRAYLHQ 60

Query: 68  VGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPAIRK 127
             + +  + ++R    +A           +   PE     ++   +++  L  L    RK
Sbjct: 61  TARNIAVDAYRREDRREAITLEAFDQRSPNSGDPEHFMHAIQLADSIERALSELPLNCRK 120

Query: 128 AFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEH 163
            F+W ++EGL   EI +RLG+ +  V++YM +   H
Sbjct: 121 IFIWQKIEGLTQQEIAERLGLSKNMVEKYMIRTLRH 156