Pairwise Alignments

Query, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

Subject, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  136 bits (343), Expect = 2e-37
 Identities = 69/159 (43%), Positives = 107/159 (67%), Gaps = 1/159 (0%)

Query: 6   PPPEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYL 65
           P     +  LY  H  WL  WL RR G    AADL+Q+TF+R+L +A+    +++PRAYL
Sbjct: 6   PLDHAAIGQLYHAHHAWLRGWLSRRTGCREHAADLAQETFVRLL-NARRQQTLQQPRAYL 64

Query: 66  LTVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPAI 125
            ++ + L+ + ++RR LE+AYL++LA  P+  VPS E R ++L++L+ +D LLD LKP +
Sbjct: 65  SSIARSLMIDQYRRRELERAYLESLAHFPQVEVPSEETRLLILDSLERIDRLLDQLKPRV 124

Query: 126 RKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHC 164
           R+AFL +QL+GL  A+I  RLGV + +V+R +++A   C
Sbjct: 125 REAFLLAQLDGLTCAQIALRLGVSKATVERDLSKALHAC 163