Pairwise Alignments

Query, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

Subject, 170 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

 Score =  161 bits (407), Expect = 6e-45
 Identities = 80/159 (50%), Positives = 113/159 (71%), Gaps = 1/159 (0%)

Query: 5   APPPEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAY 64
           +P     + ALYREHR WL+ WLRRR+G+   AADL+QDTF+R+++  Q  A I+EPRAY
Sbjct: 3   SPAATAPIDALYREHRDWLQGWLRRRLGDGHTAADLTQDTFVRVISGGQAQA-IQEPRAY 61

Query: 65  LLTVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPA 124
           L T+ +R+L NF +RR LE+A+LDALA  P++  PSPE   ++ E ++ +D  LDGL P 
Sbjct: 62  LTTLAQRVLYNFWRRRELERAWLDALAAQPQELAPSPETYALVREAVETIDRWLDGLPPK 121

Query: 125 IRKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEH 163
           +R+AFL  +LEGL +A+I  R+G+   SV+RY+ QA  H
Sbjct: 122 VREAFLLRRLEGLAHADIAVRMGISITSVERYVKQAIVH 160