Pairwise Alignments

Query, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

Subject, 175 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score =  198 bits (503), Expect = 5e-56
 Identities = 96/163 (58%), Positives = 124/163 (76%), Gaps = 6/163 (3%)

Query: 10  PGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLAD------IREPRA 63
           P +  LY +H GWL+ WLR+++GNA+DAADL+QDTFLRILA+     +      +REPRA
Sbjct: 10  PHIQTLYCDHHGWLQGWLRKKLGNAFDAADLAQDTFLRILAAPDDTPEKQGDWQLREPRA 69

Query: 64  YLLTVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKP 123
           YL  V KRLL+N ++RRSLEQAY +AL+ LPE   PSPEQ+ ++LETLQ +D +LDGL P
Sbjct: 70  YLTVVAKRLLANLYRRRSLEQAYFEALSALPEPQAPSPEQQAIILETLQEIDAMLDGLAP 129

Query: 124 AIRKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHCLL 166
            +R+AFL +QLEGLGYAEI   LGV +R+VKRYMA+A   C+L
Sbjct: 130 PVRRAFLMAQLEGLGYAEIAATLGVSERTVKRYMAEAMARCIL 172