Pairwise Alignments

Query, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 70.9 bits (172), Expect = 1e-17
 Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 6/150 (4%)

Query: 16  YREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLTVGKRLLSN 75
           YRE    L ++L  R+G+   A D++ D +LR+L        I  PRA+L      L+ +
Sbjct: 5   YRE----LVSFLSARLGSRQAAEDVAHDAYLRVLERTGS-EQIEHPRAFLYRTALNLVVD 59

Query: 76  FHQRRSLEQAY-LDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPAIRKAFLWSQL 134
            H+R+ + QA  LDAL      H    +    L + L  + + LD L    R +FL  ++
Sbjct: 60  RHRRQLVRQAEPLDALDADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFLLRKI 119

Query: 135 EGLGYAEIGQRLGVCQRSVKRYMAQAYEHC 164
           EGL + +I +RLG+ +  V++++  A +HC
Sbjct: 120 EGLSHQQIAERLGISRSLVEKHIVNAMKHC 149