Pairwise Alignments

Query, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

Subject, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

 Score =  147 bits (372), Expect = 7e-41
 Identities = 77/167 (46%), Positives = 108/167 (64%), Gaps = 4/167 (2%)

Query: 6   PPPEPGL----PALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREP 61
           PP EP L      LY EH GWL+ WL R++GNA DAADL+ DTF+R+L+         EP
Sbjct: 2   PPAEPSLNLQVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEP 61

Query: 62  RAYLLTVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGL 121
           RA L  + K L+ +  +R+ +E+AYL+A+A LP+  VPSPE RW++LETL  +D +L  +
Sbjct: 62  RALLTHIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDM 121

Query: 122 KPAIRKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHCLLAE 168
              +R+ FL SQL+GL YA+I ++L V   ++KR M  A+  CL  E
Sbjct: 122 PARVRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLACLSIE 168