Pairwise Alignments

Query, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 77.8 bits (190), Expect = 2e-19
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 8   PEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLT 67
           P  GL A ++EH   L  +L RRM +   AAD++Q+T+L+++   +    +   R+++  
Sbjct: 5   PMSGLLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFR 64

Query: 68  VGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLL--ETLQALDELLDGLKPAI 125
           V   L  +  +R     A  D      E   P+P     LL  E LQ LD+ L  L    
Sbjct: 65  VAGNLAIDALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNA 124

Query: 126 RKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHC 164
           R+A L +++EGL   ++ QRLGV +  V +Y+ QA  HC
Sbjct: 125 RQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHC 163