Pairwise Alignments

Query, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  143 bits (360), Expect = 2e-39
 Identities = 74/162 (45%), Positives = 110/162 (67%), Gaps = 3/162 (1%)

Query: 3   DAAPPPEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPR 62
           D   P E  L  LY+ H  WL  WLR R+G +  AADL+QDTF+R+L + Q ++ ++EPR
Sbjct: 5   DTLKPTEVAL--LYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQ-MSPLKEPR 61

Query: 63  AYLLTVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLK 122
           AYL ++ + L+ +  +RR+LE+AY + LA LPE  VPS E + V+L++L+ LD  L  LK
Sbjct: 62  AYLSSIARGLMIDQFRRRALERAYQEGLAHLPEAEVPSEEDKLVILDSLERLDRALQQLK 121

Query: 123 PAIRKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHC 164
           P +R+AFL +QL+GL   ++ QRLGV + +V+R +A+A   C
Sbjct: 122 PRVRQAFLLAQLDGLSIVQVAQRLGVSRATVERDLAKALGAC 163