Pairwise Alignments

Query, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

Subject, 178 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  145 bits (365), Expect = 5e-40
 Identities = 73/167 (43%), Positives = 106/167 (63%)

Query: 4   AAPPPEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRA 63
           +AP P   L  LYR H GW+  WL+R++GNA DAA+L+QD F+R+L+  +   D    RA
Sbjct: 6   SAPAPGFDLEELYRSHHGWIRQWLQRKLGNAHDAAELAQDVFVRLLSKPRVFNDHEHARA 65

Query: 64  YLLTVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKP 123
           YL  + +    +F +RR +EQAYL+ LA  PEQ  PS E + V+LETL+ L  + + +  
Sbjct: 66  YLGRMSRNACVDFWRRRRVEQAYLEVLAAQPEQLAPSLEHQAVILETLEQLQAMFERMPQ 125

Query: 124 AIRKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHCLLAELQ 170
            + +AF  +QL+G+   EI ++LGV +RSV  Y+AQA   CLL E +
Sbjct: 126 RVAEAFSMAQLQGMKQREIAEQLGVSERSVNSYLAQAMYQCLLLEAE 172