Pairwise Alignments

Query, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

Subject, 173 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  152 bits (383), Expect = 4e-42
 Identities = 75/158 (47%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 7   PPEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLL 66
           P    +  LY +H GWL  WLR ++GNA DAADL+QDTF+R+L   + L  +  PRA+L 
Sbjct: 8   PSNDSVQTLYSDHHGWLHTWLRSKLGNAADAADLAQDTFVRLLQRREQL-QLNAPRAFLR 66

Query: 67  TVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPAIR 126
           TV + L+ +  +R  L +AYL+ALA +PE  VPS E R +LLE L+ +  +LDGLKP +R
Sbjct: 67  TVARGLVIDHWRREELHRAYLEALAHVPEALVPSVETRELLLELLERIARMLDGLKPKVR 126

Query: 127 KAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHC 164
           +AFL +Q EGL +  I +++G+  R+V+RY+A A  HC
Sbjct: 127 RAFLLAQCEGLKHQAIAEQMGISVRTVERYIANALYHC 164