Pairwise Alignments

Query, 325 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 316 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  108 bits (270), Expect = 2e-28
 Identities = 89/310 (28%), Positives = 136/310 (43%), Gaps = 11/310 (3%)

Query: 13  PDFALLPFGAFLDKLRFSADDEDYSQQRYCSWMVAGLSLEPVPSSSGAVLQVEAIADQLD 72
           PDF LL     L+   FS  +       +   +  G    P+ +S+G  +Q + + DQ  
Sbjct: 10  PDFLLLDMAGPLEV--FSIANRYLPAAEHYRILTLGTEPGPLRASNGVAVQTDLLLDQAQ 67

Query: 73  LDLFDYLVVFGGRSAMATA--ALAPRYQALLRQAAKAGVKLVGVDNGAFLLAACGLLQGH 130
            D +D L+V GG  A      AL P  +A   +A + G     +  GAF+L   GLL  H
Sbjct: 68  -DAYDLLLVPGGPGAYNECHPALLPWLKAAAPRARRFG----SICTGAFVLGHAGLLDNH 122

Query: 131 KVVVHWRHEAEFRAAFPQLQLLREQLYCIDGNRITCAGGTAAIDLAVALLSRACGRTRAL 190
           +V  HW +      AFP+  +  +++Y  DG  IT  G TA IDLA++++++  G+  A+
Sbjct: 123 RVTTHWHYTERLIKAFPKAIVETDRIYLQDGRLITSGGVTAGIDLALSVVAQDHGKQVAV 182

Query: 191 KGLADMLVDETRDSRHALRSLELGAC--QGRQVQRAQALMRHHLGTPLAVEQLAAELGIS 248
                +LV   R    A  S    A   Q   + R Q  +  HL  P  +E +AA  G+S
Sbjct: 183 DVAKVLLVVMKRQGGQAQFSPMTAAVAPQETAITRVQNHVLEHLCEPFTIESMAALAGMS 242

Query: 249 RRQLDRQFQASHGMSTKAWWLEMRLQQARWRLLNSSHSLAQIADEVGLGDASYLGKCVRR 308
            R   R F     M+  A+    R+ +AR  L  +   L  +A   G G   ++      
Sbjct: 243 ARHFARLFAKEVQMTPMAFLQGARIDRARQLLETTDLPLKTVAFHAGFGSVRHMRFLFSE 302

Query: 309 RFGCTALQLR 318
           + G    Q R
Sbjct: 303 KLGLNPTQYR 312