Pairwise Alignments

Query, 325 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 313 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Sphingobium sp. HT1-2

 Score =  108 bits (271), Expect = 1e-28
 Identities = 85/270 (31%), Positives = 131/270 (48%), Gaps = 12/270 (4%)

Query: 53  PVPSSSGAVLQVEAIADQLDLDLFDYLVVFGGRSAMATAALAPRYQALLRQAAKAGVKLV 112
           PV SSSG  +    + +   +D    L++  G   M          A+L+  A    ++ 
Sbjct: 46  PVASSSGFEIPTVPLGEAGPVDT---LLLMAG--LMPPPPQDAETLAVLQATALPARRIA 100

Query: 113 GVDNGAFLLAACGLLQGHKVVVHWRHEAEFRAAFPQLQLLREQLYCIDGNRITCAGGTAA 172
           G+  GAFLLA  GLL G +   HW +    R  FP +++  ++++  +G+  T AG TA 
Sbjct: 101 GLCTGAFLLAQMGLLDGRRATTHWAYARMMRDGFPDVRVEEDRIFINEGSVWTSAGLTAG 160

Query: 173 IDLAVALLSRACGRTRALKGLADMLVDETR----DSRHALRSLELGACQGRQVQRAQALM 228
           +D+ VA++ +  G   A + +A  LV   R     S+H+   L+L     R +Q+A    
Sbjct: 161 LDVVVAMVEKDLGADVA-RSVARRLVMHHRRAGGQSQHS-EMLDLAPSSDR-IQKALVHA 217

Query: 229 RHHLGTPLAVEQLAAELGISRRQLDRQFQASHGMSTKAWWLEMRLQQARWRLLNSSHSLA 288
           R HL  PL VE+LA    +S RQ  R F+A  G S      ++RL+ AR  L ++ HSL 
Sbjct: 218 RSHLQNPLTVEELADVAALSPRQFSRAFRAETGQSPAKAVEQLRLEAARLLLEDTRHSLE 277

Query: 289 QIADEVGLGDASYLGKCVRRRFGCTALQLR 318
            +A EVG  D   + +   R +G     LR
Sbjct: 278 AVAREVGFIDLRRMREVFMRNYGQPPQALR 307