Pairwise Alignments

Query, 282 a.a., glycine betaine ABC transporter (permease) from Pseudomonas putida KT2440

Subject, 343 a.a., ABC transporter, membrane spanning protein (proline/glycine betaine) from Agrobacterium fabrum C58

 Score =  202 bits (513), Expect = 1e-56
 Identities = 110/259 (42%), Positives = 164/259 (63%), Gaps = 2/259 (0%)

Query: 21  VDWLVLNYGDHLRSLSDQLLQLLVGLENLLRLL-PWWLLLLLVGLLAWHASRSLLRSAVL 79
           +DWL  N       LS     ++  L  +L+   P  ++ ++  L AW    + +     
Sbjct: 81  IDWLTGNLAFFFDWLSFIFQSVINALLYVLQAPHPLIIVAIVTALSAWTRRSAGMPIFTA 140

Query: 80  VALLALIGMLGLWDKLLQTLALVLVSTGLCVLVGVPLGILLAARPLARRLLLPVLDVMQT 139
           + LL +I  LG W    +TLALV+ ++ +C+++G+PLGIL A R      + P LD+MQT
Sbjct: 141 LGLLLIIN-LGYWKATTETLALVIAASAVCMIIGIPLGILAARRKWIYAGMRPALDLMQT 199

Query: 140 LPAFVYLIPVLMLFGLGKVPAVFATLIYALPPLVRLTELGLSQIDPSLLQAAHGLGASRW 199
           +P FVYLIP L+LFGLG VP + AT+I+A+P  VRLT LG+    P+L++AA   GA+  
Sbjct: 200 IPTFVYLIPALVLFGLGMVPGLIATVIFAIPAPVRLTRLGIVSTPPALVEAAVAFGATPS 259

Query: 200 QRLRRIALPLALPSIMAGLNQSVMMALSMVVVASMIGARGLGEDVLAGIQTLNVGQGMEA 259
           Q LR++ LP A P IMAGL Q++M++LSMVV+++++GA GLG  V+  + T+N+  G EA
Sbjct: 260 QVLRKVELPFAAPQIMAGLTQTIMLSLSMVVISALVGANGLGVPVVRALNTVNIAMGFEA 319

Query: 260 GLAIVALAMVIDRISQAYG 278
           GL IV LA+V+DR+ +  G
Sbjct: 320 GLCIVILAIVLDRLFRLPG 338