Pairwise Alignments

Query, 335 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

Subject, 316 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  151 bits (381), Expect = 2e-41
 Identities = 101/315 (32%), Positives = 152/315 (48%), Gaps = 9/315 (2%)

Query: 11  DDAITDAAAHWCMRLHAEDCTQAEREAFADWLAADPRHAEEYQAMLEIWQTADLLPRSAT 70
           D+   D AA W +RL   + + AER+ F  W    P H  E+  +  +W    LLP++  
Sbjct: 2   DNRARDEAAQWFVRLQDAELSIAERQRFDAWRNEHPDHQYEFDVLQGLWSATGLLPKARL 61

Query: 71  VIDFNPPARHAARPRNWRPLASAAAIALAVLPLAGWMGWEQGWLPNHYQ-HFEAG-DRMQ 128
                 P     R    R   +A  IA+A L L  + G +    P  Y   F  G    +
Sbjct: 62  QALCEAPVERPKRRAVLRYAVAAGVIAVA-LGLGLFSGLDH---PKPYSAEFSTGVGEHR 117

Query: 129 TVELSDGSTVQLNLHTELTFLNYKDQRQVTLKRGEAFFKVRHDSSHPFIVRAGSGQTRVT 188
            V L DGS + LN  T +     K +R V LK+GEA F V HD+S PF+V AG+GQ  VT
Sbjct: 118 QVALPDGSVMDLNSRTVVAVQYEKGRRGVELKQGEAMFSVEHDTSRPFVVAAGAGQVTVT 177

Query: 189 GTQFNVWKYQDQVKVTLVEGSVLVSSEGSAGGYRLGPGMQASY-HKGDFEPQLEQSDDYG 247
           GT+F+V + + Q +V +  G+V V  +       L  G+     +KG        + +  
Sbjct: 178 GTRFDVRRDEGQTRVMVEAGTVKVQGDSPDNLVTLTAGLGTHVDNKGSVAAAYTVNTE-- 235

Query: 248 NSLAWRSGKLVLDNLSLEQALPVINRYLDAPLLLADASTGRIRISGIYNTREVGRLVNNL 307
              AWR+GKLV +N  L +    ++RY + PL ++  + G +R++ ++   +   L+  L
Sbjct: 236 ELTAWRTGKLVFNNALLGEVAREVSRYRERPLRVSTPAVGNLRLTSVFKANDTDALLKAL 295

Query: 308 PKVLPVYLTRSKDGS 322
           P +LPV L    DGS
Sbjct: 296 PHILPVALRTLPDGS 310