Pairwise Alignments

Query, 335 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

Subject, 325 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  117 bits (294), Expect = 3e-31
 Identities = 94/318 (29%), Positives = 144/318 (45%), Gaps = 20/318 (6%)

Query: 6   LNPNPDDAITDAAAHWCMRLHAEDCTQAEREAFADWLAADPRHAEEYQAMLEIWQTADLL 65
           +N  P  A   AA  W   LH +  +  ++  F+ WL ADP H E Y     +W+ +++ 
Sbjct: 1   MNVTPTPAQEQAALAWLSLLHDQP-SGGDQATFSQWLRADPAHVEAYAQAQVLWELSEVP 59

Query: 66  PRS-----ATVID-----FNPPARHAARPRNWR-PLASAAAIALAVLPLAGWMGWEQGWL 114
            R      A V+       NP  R  +R   W   LA AA + L V    GW      W+
Sbjct: 60  ARKLADEEALVLQGYLNAMNPSKR--SRVARWSGALAMAACLLLMVFMGVGWQ--PSRWV 115

Query: 115 PNH-YQHFEAGDRMQTVELSDGSTVQLNLHTELTFLNYKDQRQVTLKRGEAFFKVRHDSS 173
            +    +  A   ++TV L+D S V L+  + +     + +R + L+RG  FF V H + 
Sbjct: 116 DDFGADYVTAPGEVKTVTLADQSQVTLDADSAIAVDFTQGERHIQLRRGAGFFSVTH-TG 174

Query: 174 HPFIVRAGSGQTRVTGTQFNVWKYQDQVKVTLVEGSVLVSSEGSAGGYRLGPGMQASYHK 233
             F+V AGSG+ RV GTQF V       +VT++ G V V+         L  G Q +Y +
Sbjct: 175 QSFVVEAGSGEARVLGTQFEVRLQPAGAEVTVLSGRVGVTPSKQGQQQILTAGQQVAYAE 234

Query: 234 GDFEPQLEQSDDYGNSLAWRSGKLVLDNLSLEQALPVINRYLDAPLLLADASTGRIRISG 293
           G  +     + D  + LAWR G L      L   +  + RY    +LL +   G  R+SG
Sbjct: 235 GVADAL--HAVDSESRLAWRDGWLNYYKAPLSDVVKDLERYYPGRILLLNKEMGAKRVSG 292

Query: 294 IYNTREVGRLVNNLPKVL 311
            + +++   ++N L  VL
Sbjct: 293 SFPSKDPQAVLNALQAVL 310