Pairwise Alignments

Query, 397 a.a., multidrug efflux transport system - membrane fusion protein from Pseudomonas putida KT2440

Subject, 440 a.a., Multidrug efflux system EmrAB-OMF, membrane fusion component EmrA from Variovorax sp. SCN45

 Score =  387 bits (993), Expect = e-112
 Identities = 212/406 (52%), Positives = 278/406 (68%), Gaps = 24/406 (5%)

Query: 6   DTPTPSVAPEPSR--------KRKAWLLGLLLLLILAGVGTWAWYS-IVGRWHESTDDAY 56
           +TPTP+ A  P+         KR+  L  L  ++I+AG G W  Y  +V   +E TD+AY
Sbjct: 5   NTPTPAAAAAPAAPEAPAGNGKRRRALTALAAVVIVAG-GGWGLYEWLVASHYEDTDNAY 63

Query: 57  VNGNVVEITPLVAGTVTSIGADDGDLVHAGQVLLQFDPADSEVALQSAEAKLARSVRQVR 116
           V+GNV++ITP + GTV SI ADD D V AGQ L+Q DPAD++VAL+ AEA LA++VRQVR
Sbjct: 64  VSGNVIQITPQIGGTVMSINADDTDFVKAGQPLVQLDPADAKVALEQAEAALAQAVRQVR 123

Query: 117 GLYSNVDSLKAQLETRQAEL-------RKAQQDFNRRKVLADSGAIAAEELSHA------ 163
            LY+N  SL AQ+  RQ+++        KAQ D  RR+ L+ +GA++ EEL+HA      
Sbjct: 124 TLYANNGSLAAQVTLRQSDIVKAQSDIAKAQDDLQRRRALSGNGAVSKEELNHAETALDT 183

Query: 164 -RDDLSVAQAAVNSARQQLSTSSALVDDTVVSSHPDVMAAAADLRQAYLDHARTTLVAPV 222
            +  L+ AQA V +A++ L ++ +L + T V+ HP V+AAAA +R+AYL   R  + APV
Sbjct: 184 AKSQLAAAQAGVIAAKEALVSNQSLTEGTSVAQHPSVLAAAAKVREAYLATQRVAMPAPV 243

Query: 223 TGYVAKRTVQLGQRLQPGTATMAVIPLDQVWIDANFKETQLREMRIGQPVEITADVYGSE 282
            GYVAKRTVQLGQR+  GT  M+++PL+Q+W+DANFKE QLR +RI QPV++TADVYG +
Sbjct: 244 DGYVAKRTVQLGQRVAAGTPMMSIVPLNQLWVDANFKEVQLRNIRIDQPVKLTADVYGKK 303

Query: 283 VKYSGTVDSLGAGTGSAFALLPAQNATGNWIKIVQRVPVRIHLSPDQLKDHPLRIGLSTV 342
           V+Y+G V  LG GTGSAFALLPAQNATGNWIK+VQRVPVRI L P+QLK +PLRIGLS  
Sbjct: 304 VEYTGKVAGLGVGTGSAFALLPAQNATGNWIKVVQRVPVRIALDPEQLKANPLRIGLSMD 363

Query: 343 VEVDLHDQSGPTLAQQPPQKASYTTQVYDHQLMEADNLIARLIHEN 388
            EVD+  +SG  LA  P   A   TQVY      AD  + R++  N
Sbjct: 364 AEVDISSKSGKMLADAPRPAALVQTQVYSQLDRGADAEVDRIVAAN 409