Pairwise Alignments

Query, 397 a.a., multidrug efflux transport system - membrane fusion protein from Pseudomonas putida KT2440

Subject, 432 a.a., multidrug resistance efflux pump from Agrobacterium fabrum C58

 Score =  188 bits (478), Expect = 2e-52
 Identities = 133/377 (35%), Positives = 193/377 (51%), Gaps = 24/377 (6%)

Query: 2   ATPTDTPTPSVAPEPSRKRKAWLLGLLLLLILAGVGTWAWYS--IVGRWHESTDDAYVNG 59
           A P  TP P+VA  P  K+++ LL +  L +L G G W  Y+  I GR+  STDDAY+ G
Sbjct: 61  APPQATPAPAVAA-PKAKKRSPLLPIFALALLVGAG-WYGYNWWIDGRFMVSTDDAYIQG 118

Query: 60  NVVEITPLVAGTVTSIGADDGDLVHAGQVLLQFDPADSEVALQSAEAK-------LARSV 112
           ++  I P VAG V  +   +   V AG  L+  D  D  +A + A+A+       L R  
Sbjct: 119 DIAVIAPKVAGYVAKVNVVENQEVKAGDPLVTLDDGDYRIAFEQADAQIRTEQLSLKRID 178

Query: 113 RQVRGLYSNVDSLKAQLETRQAELRKAQQDFNRRKVLA--DSGAIAAEE-----LSHARD 165
            Q+ G  +  +   AQ     A LR A+    R   L   D G +AA +     L  AR 
Sbjct: 179 AQIIGGEAAQEQAVAQKGALDAALRGAEITQKRATELQAKDVGTVAASDNAQVALDQARA 238

Query: 166 DLSVAQAAVNSARQQLSTSSALVDDTVVSSHPDVMAAAADLRQAYLDHARTTLVAPVTGY 225
           ++   +AA++SA+  +    A  ++    +   + +      +A  D A T L AP  G 
Sbjct: 239 NVVAGEAAISSAKANVELLRAQREE----AESTIRSLQLSKDKAARDLAFTVLKAPYDGV 294

Query: 226 VAKRTVQLGQRLQPGTATMAVIPLDQVWIDANFKETQLREMRIGQPVEITADVYGSEVKY 285
           +    VQ G  +  G    +++P+++++IDANFKETQL  +  G  V +  D +  E   
Sbjct: 295 IGNLAVQTGDLVSVGKRLASLVPMNELYIDANFKETQLARVVPGSKVRVHVDAFDDEA-I 353

Query: 286 SGTVDSLGAGTGSAFALLPAQNATGNWIKIVQRVPVRIHLSPDQLKDHPLRIGLSTVVEV 345
            GTV S+  G+GS F++LP +NATGN+ K++QRVPVRI  S + L  H LR GLS VV+V
Sbjct: 354 EGTVQSISPGSGSVFSMLPPENATGNFTKVIQRVPVRIVFSKEDLAKHNLRAGLSVVVDV 413

Query: 346 DLHDQSGPT-LAQQPPQ 361
           D       T  AQ  PQ
Sbjct: 414 DTRTAPENTRTAQVNPQ 430