Pairwise Alignments
Query, 688 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440
Subject, 958 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5
Score = 293 bits (750), Expect = 3e-83
Identities = 234/678 (34%), Positives = 319/678 (47%), Gaps = 81/678 (11%)
Query: 68 VLANAAYAKHAGIP--NVVGQKLREMVPDEADDWVARYGAVLRTGEPLHFEQELIATG-- 123
+ N A+ GIP G+ L +M+P AD VL TGE + + AT
Sbjct: 169 IRVNEMLARIDGIPAREHAGRSLADMLPQLADAVTPSLERVLATGEVIADVELEGATPAA 228
Query: 124 ------HVLSVTTFRIEPAEKRQVAVLFKDVTERRRAEQALQRLNEELEQRVNAALAERR 177
++S R V ++ ++TER+RAE+A+ EQR R
Sbjct: 229 PGVWRHFLVSYFPVRTSSEAINLVGMIVVEITERKRAEKAIAAS----EQRY-------R 277
Query: 178 LFAELVDHSVVNVHVVDK----DLRWLAVNRQARHDFHLLYGRTPEIGDYLPGLFEDGTA 233
L AE + V + RW ++ + E+ ++ L +
Sbjct: 278 LLAEALPKMVWTSSPAGTGDYYNHRWA--------EYTGVEAPPGEVVEWHAFLHPEEKG 329
Query: 234 GQTPILPMWQRALA-GEQFIEIGTF-GKPPAVRHYELRFNALRDPKGEVQGAFLFAYDIS 291
G I+ W+ +LA G F F K + R + R +RD G V + DIS
Sbjct: 330 G---IMGAWEASLASGNPFSRECRFRAKDGSYRWFLCRAVPVRDEDGRVDRWYGSCTDIS 386
Query: 292 ERV--------------------------------QEQERLAKAEAALRQAQKMEAVGQL 319
E V QE E +AE+ LRQAQKMEAVGQL
Sbjct: 387 EIVAAREALSRTNEDLERLAAARTMQLAETNTLLKQEMEERLRAESQLRQAQKMEAVGQL 446
Query: 320 SGGIAHDFNNLLGGILGAQELMRQRLDQSRFDA---------LAPLLELSSSAAQRASSL 370
+GGIAHDFNNLL I+G E +R+ D + L+ A RA+ L
Sbjct: 447 TGGIAHDFNNLLTIIIGNIEAAERRVPADPQDTRTQEIKTQEIRRFLDYGRQGALRAAIL 506
Query: 371 VHRLLAFSRQQTLQPCSTQVATLVAGMEDLLRRTIGPAITLSSRFASQLWPTFIDPPQLE 430
RLLAFSR+Q L P T V LV GM +LR +G + + + A LW T ID QLE
Sbjct: 507 TQRLLAFSRRQPLDPRPTDVNRLVTGMSHMLRSALGERVMVETVLAGGLWRTEIDHNQLE 566
Query: 431 SALLNLCINARDAMPAGGVIEIIGDNLLLDDEQAVALE-LPASEFVRLSIVDNGSGMSAE 489
+A+LNL +NARDAM GG + I N LD+ E L ++V + + D G GMS +
Sbjct: 567 NAILNLAVNARDAMMDGGKLTIETANAYLDEAYCAEHEDLEPGQYVAIFVSDTGMGMSDD 626
Query: 490 VVERAVEPFFTTKPMGQGTGLGLSMTYGFVRQSGGQLRVLSVPGEGTRIELLLPRHHEQA 549
V RA EPFFTTK GTGLGLS YGFV+QSGG + + S G+GT ++L LPR E
Sbjct: 627 VRARAFEPFFTTKGPKDGTGLGLSQVYGFVKQSGGHVMIYSERGDGTTVKLYLPRLEETP 686
Query: 550 QAPISKPPRTLLQRSSEAAKRILLVEDQTALRLVIGEVLEELGYRVDAFENGPSALTHLQ 609
P PPRT + + A +L+VED LR + L E G+ V E+ +AL L
Sbjct: 687 SVPEPDPPRTDGETRAAPAV-VLMVEDDDQLRTMGAATLREAGHTVIEAEDASAALDALS 745
Query: 610 SGERPDLLLSDVGLPGGLNGRQVAERFRERYPDLKVLLITGYDESAAFSDGQPLQGTLVL 669
G RPDLL +DV L G++GR +A+ + R P +VL T Y +A G+ G +L
Sbjct: 746 RGARPDLLFTDVRLGDGMDGRGLADEVKRRLPRTRVLFTTAYARNAVVHQGRLDPGMKLL 805
Query: 670 TKPFELEALAERVRELLE 687
TKP+ L +V +L+
Sbjct: 806 TKPYSQSELVTKVNGMLD 823
Score = 56.6 bits (135), Expect = 5e-12
Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 16/124 (12%)
Query: 571 ILLVEDQTALRLVIGEVLEELGYRVDAFENGPSALTHLQSGE----RPDLLLS--DVGLP 624
+LLVED+ + +V ++LE+ G++V +G +AL+H ++ + R L+L+ D+GLP
Sbjct: 831 VLLVEDEPFVAMVASQILEDQGFKVTVASHGEAALSHARNAKADIGRDALVLAIVDIGLP 890
Query: 625 GGLNGRQVAERFRERYPDLKVLLITGY---DESAAFSDGQPLQGTLVLTKPFE---LEAL 678
+ G +V R E P+L V++ TGY D S F G+ G V++KP++ L A
Sbjct: 891 -DMRGDEVVRRLGEIAPELPVIVATGYATQDISQMFG-GRVDVG--VISKPYDGATLVAA 946
Query: 679 AERV 682
ERV
Sbjct: 947 LERV 950
Score = 27.3 bits (59), Expect = 0.004
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 21/163 (12%)
Query: 158 LQRLNEELEQRVNAALAERRLFAEL---VDHSVVNVHVVDKDLRWLAVNRQ-ARHD---F 210
L+RL+ ++AA + + A L + H+ V D R++ VN AR D
Sbjct: 124 LRRLDSAHAALLSAASEQTAVVATLEALLQHAPVGFAFFDAQRRFIRVNEMLARIDGIPA 183
Query: 211 HLLYGRTPEIGDYLPGLFEDGTAGQTPILPMWQRALAGEQFI-----EIGTFGKPPAVRH 265
GR+ + D LP L + + P +R LA + I E T P RH
Sbjct: 184 REHAGRS--LADMLPQLAD-------AVTPSLERVLATGEVIADVELEGATPAAPGVWRH 234
Query: 266 YELRFNALRDPKGEVQGAFLFAYDISERVQEQERLAKAEAALR 308
+ + + +R + + +I+ER + ++ +A +E R
Sbjct: 235 FLVSYFPVRTSSEAINLVGMIVVEITERKRAEKAIAASEQRYR 277