Pairwise Alignments

Query, 688 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 991 a.a., two component sensor kinase/response regulator hybrid from Agrobacterium fabrum C58

 Score =  289 bits (739), Expect = 5e-82
 Identities = 163/392 (41%), Positives = 237/392 (60%), Gaps = 7/392 (1%)

Query: 296 EQERLAKAEAALRQAQKMEAVGQLSGGIAHDFNNLLGGILGAQELMRQRLDQSRFDALAP 355
           E     + E AL+QAQKME++GQL+GG+AHDFNNLL  I G  +L+ +  D    +    
Sbjct: 451 EMAERRQTEKALQQAQKMESIGQLTGGVAHDFNNLLQVIAGNLQLLSK--DVIGNERAER 508

Query: 356 LLELSSSAAQRASSLVHRLLAFSRQQTLQPCSTQVATLVAGMEDLLRRTIGPAITLSSRF 415
            LE + +   R + L  +LLAF R+Q L+P    +A  V GM+DLLRR++G  I +    
Sbjct: 509 RLENALAGVHRGAKLASQLLAFGRRQALEPRVINIARFVTGMDDLLRRSLGEGIEVEVIT 568

Query: 416 ASQLWPTFIDPPQLESALLNLCINARDAMPAGGVIEIIGDNLLLDDEQAVA-LELPASEF 474
           +  LW T+ DP Q+E+ALLNL INARDAM   G + I   N +LD + A    E+ A ++
Sbjct: 569 SGGLWNTYADPNQVENALLNLAINARDAMEGHGKLTIEVGNAVLDRDYARKHSEVSAGQY 628

Query: 475 VRLSIVDNGSGMSAEVVERAVEPFFTTKPMGQGTGLGLSMTYGFVRQSGGQLRVLSVPGE 534
           V L++ D GSGMS E++E+  EPFF+TKP G+GTGLGLSM YGF +QS G + + S  G+
Sbjct: 629 VMLAVTDTGSGMSPEILEKVFEPFFSTKPEGKGTGLGLSMVYGFAKQSSGHVNIYSEVGQ 688

Query: 535 GTRIELLLPRHHEQAQAPISKPPRTLLQRSSEAAKRILLVEDQTALRLVIGEVLEELGYR 594
           GT +++ LPR        +  P   +        + IL+VED   +R  + E L +LGYR
Sbjct: 689 GTTVKMYLPRSAADEDREVVMPTGPV----EGGTETILVVEDDEEVRNTVVETLGDLGYR 744

Query: 595 VDAFENGPSALTHLQSGERPDLLLSDVGLPGGLNGRQVAERFRERYPDLKVLLITGYDES 654
           V    +  + LT ++SG   D++ +DV +PG L  R++A R +ER P+L VL  +GY E+
Sbjct: 745 VLTARDAQAGLTVVESGIPIDVIFTDVVMPGSLKSREMARRAQERLPNLAVLFTSGYTEN 804

Query: 655 AAFSDGQPLQGTLVLTKPFELEALAERVRELL 686
           +    G+   G  +L+KP+  EALA R+R ++
Sbjct: 805 SIVHGGKLDAGVELLSKPYTREALARRLRHVI 836



 Score = 53.5 bits (127), Expect = 5e-11
 Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 7/147 (4%)

Query: 537 RIELLLPRHHEQAQAPISKPPRTLLQRSSEAAK-RILLVEDQTALRLVIGEVLEELGYRV 595
           R ++ L R    A    SK  +T     SE    R+LLVED   +R+   E+L + G+ V
Sbjct: 839 RKQVSLSRAQPAATNGYSKLSQTASAVDSENRSIRVLLVEDDELIRMNSTEMLSDSGFAV 898

Query: 596 DAFENGPSALTHLQSGERPDLLLSDVGLPGGLNGRQVAERFRERYPDLKVLLITGYDESA 655
               N   AL  +++ +  D+L++D+GLP    G   AE  R R P L ++  TG    +
Sbjct: 899 VEAGNAAQALEVIEA-DPIDVLVTDLGLPDMKGGELAAEALR-RKPGLAIVFATG---DS 953

Query: 656 AFSDGQPLQGTLVLTKPFELEALAERV 682
              +G P +  ++LTKP++ + +   V
Sbjct: 954 HLPEGAP-ESAVLLTKPYDEQQIVAAV 979



 Score = 37.7 bits (86), Expect = 3e-06
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 100 VARYGAVLRT----GEPLHFEQELIA--TGHVLSVTTFR-IEPAEKRQVAVLFKDVTERR 152
           V R+  V RT    G P+  +   IA   G    +T  R  E   K   + L +++  R 
Sbjct: 372 VRRHDGVYRTFSIRGVPIFDKDGAIAEWVGVHTDITEQRQSEDTLKEHASNLEREIRHRI 431

Query: 153 RAEQALQRLNEELEQRVNAALAERR 177
           RAE+ L++LNE LE RV   +AERR
Sbjct: 432 RAEEQLRQLNEGLEARVEMEMAERR 456