Pairwise Alignments

Query, 553 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 958 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

 Score =  285 bits (728), Expect = 7e-81
 Identities = 182/408 (44%), Positives = 221/408 (54%), Gaps = 15/408 (3%)

Query: 154 EQERLQQAEEALRQAQKMEAVGQLTGGIAHDFNNLLASILGALELAGQRLVQQRLADTTQ 213
           E E   +AE  LRQAQKMEAVGQLTGGIAHDFNNLL  I+G +E A +R+        TQ
Sbjct: 423 EMEERLRAESQLRQAQKMEAVGQLTGGIAHDFNNLLTIIIGNIEAAERRVPADPQDTRTQ 482

Query: 214 ---------LLELSRHNAQRAAALVQRLLAFSRQQTLVPQRVDVQQLVAGMHDLISSSTG 264
                     L+  R  A RAA L QRLLAFSR+Q L P+  DV +LV GM  ++ S+ G
Sbjct: 483 EIKTQEIRRFLDYGRQGALRAAILTQRLLAFSRRQPLDPRPTDVNRLVTGMSHMLRSALG 542

Query: 265 PYVDYHDQTHAGLWPIRIDAQQLENALLNLCINARDAMPLGGTLSIGCANVEVQGAE-AR 323
             V        GLW   ID  QLENA+LNL +NARDAM  GG L+I  AN  +  A  A 
Sbjct: 543 ERVMVETVLAGGLWRTEIDHNQLENAILNLAVNARDAMMDGGKLTIETANAYLDEAYCAE 602

Query: 324 QLGLAAGRFLRIRVEDTGMGMSKAVMQRALEPFFTTKPLGQGTGLGLSMVYGFVRQSGGQ 383
              L  G+++ I V DTGMGMS  V  RA EPFFTTK    GTGLGLS VYGFV+QSGG 
Sbjct: 603 HEDLEPGQYVAIFVSDTGMGMSDDVRARAFEPFFTTKGPKDGTGLGLSQVYGFVKQSGGH 662

Query: 384 LVIDSTLGQGTAINLYLP-CDESIAAASPSPHVEGPAPAASLQQRVCKVMLVEDEPALRL 442
           ++I S  G GT + LYLP  +E+ +   P P    P      +     V++VED+  LR 
Sbjct: 663 VMIYSERGDGTTVKLYLPRLEETPSVPEPDP----PRTDGETRAAPAVVLMVEDDDQLRT 718

Query: 443 VMLEVLLDQGHEVQAFEDGRQAYKALQEAPAPDLLITDVGLPGGIDGYQLADACRGIAPH 502
           +    L + GH V   ED   A  AL     PDLL TDV L  G+DG  LAD  +   P 
Sbjct: 719 MGAATLREAGHTVIEAEDASAALDALSRGARPDLLFTDVRLGDGMDGRGLADEVKRRLPR 778

Query: 503 AAVLLITGYDLAHSTAKARPHRRTELLAKPFDLQALAQALERLLGSTA 550
             VL  T Y       + R     +LL KP+    L   +  +L   A
Sbjct: 779 TRVLFTTAYARNAVVHQGRLDPGMKLLTKPYSQSELVTKVNGMLDEPA 826



 Score = 53.9 bits (128), Expect = 3e-11
 Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 7/121 (5%)

Query: 431 VMLVEDEPALRLVMLEVLLDQGHEVQAFEDGRQAYKALQEAPAP------DLLITDVGLP 484
           V+LVEDEP + +V  ++L DQG +V     G  A    + A A        L I D+GLP
Sbjct: 831 VLLVEDEPFVAMVASQILEDQGFKVTVASHGEAALSHARNAKADIGRDALVLAIVDIGLP 890

Query: 485 GGIDGYQLADACRGIAPHAAVLLITGYDLAHSTAKARPHRRTELLAKPFDLQALAQALER 544
             + G ++      IAP   V++ TGY     +          +++KP+D   L  ALER
Sbjct: 891 -DMRGDEVVRRLGEIAPELPVIVATGYATQDISQMFGGRVDVGVISKPYDGATLVAALER 949

Query: 545 L 545
           +
Sbjct: 950 V 950



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 12/158 (7%)

Query: 15  RVAELEARLAAREDNVQAHDRLLGELLDNSVANVFAADRSMRLLAINRTARETFERYRGF 74
           R+    A L +      A    L  LL ++       D   R + +N    E   R  G 
Sbjct: 126 RLDSAHAALLSAASEQTAVVATLEALLQHAPVGFAFFDAQRRFIRVN----EMLARIDGI 181

Query: 75  VPQVGDYVPQFLTDQ-PDIMGRLAPIWPRILA-GEAFIDTVTFGLDDAP----RHYEIRY 128
             +  ++  + L D  P +   + P   R+LA GE   D    G   A     RH+ + Y
Sbjct: 182 PAR--EHAGRSLADMLPQLADAVTPSLERVLATGEVIADVELEGATPAAPGVWRHFLVSY 239

Query: 129 HPWLDAQQRIQGGYLFAYDITQRVTEQERLQQAEEALR 166
            P   + + I    +   +IT+R   ++ +  +E+  R
Sbjct: 240 FPVRTSSEAINLVGMIVVEITERKRAEKAIAASEQRYR 277