Pairwise Alignments

Query, 553 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 991 a.a., two component sensor kinase/response regulator hybrid from Agrobacterium fabrum C58

 Score =  267 bits (683), Expect = 1e-75
 Identities = 156/402 (38%), Positives = 229/402 (56%), Gaps = 15/402 (3%)

Query: 154 EQERLQQAEEALRQAQKMEAVGQLTGGIAHDFNNLLASILGALELAGQRLVQQRLADTTQ 213
           E    +Q E+AL+QAQKME++GQLTGG+AHDFNNLL  I G L+L  + ++    A+  +
Sbjct: 451 EMAERRQTEKALQQAQKMESIGQLTGGVAHDFNNLLQVIAGNLQLLSKDVIGNERAE--R 508

Query: 214 LLELSRHNAQRAAALVQRLLAFSRQQTLVPQRVDVQQLVAGMHDLISSSTGPYVDYHDQT 273
            LE +     R A L  +LLAF R+Q L P+ +++ + V GM DL+  S G  ++    T
Sbjct: 509 RLENALAGVHRGAKLASQLLAFGRRQALEPRVINIARFVTGMDDLLRRSLGEGIEVEVIT 568

Query: 274 HAGLWPIRIDAQQLENALLNLCINARDAMPLGGTLSIGCANVEVQGAEARQLG-LAAGRF 332
             GLW    D  Q+ENALLNL INARDAM   G L+I   N  +    AR+   ++AG++
Sbjct: 569 SGGLWNTYADPNQVENALLNLAINARDAMEGHGKLTIEVGNAVLDRDYARKHSEVSAGQY 628

Query: 333 LRIRVEDTGMGMSKAVMQRALEPFFTTKPLGQGTGLGLSMVYGFVRQSGGQLVIDSTLGQ 392
           + + V DTG GMS  ++++  EPFF+TKP G+GTGLGLSMVYGF +QS G + I S +GQ
Sbjct: 629 VMLAVTDTGSGMSPEILEKVFEPFFSTKPEGKGTGLGLSMVYGFAKQSSGHVNIYSEVGQ 688

Query: 393 GTAINLYLP---CDESIAAASPSPHVEGPAPAASLQQRVCKVMLVEDEPALRLVMLEVLL 449
           GT + +YLP    DE      P+  VEG             +++VED+  +R  ++E L 
Sbjct: 689 GTTVKMYLPRSAADEDREVVMPTGPVEGGTET---------ILVVEDDEEVRNTVVETLG 739

Query: 450 DQGHEVQAFEDGRQAYKALQEAPAPDLLITDVGLPGGIDGYQLADACRGIAPHAAVLLIT 509
           D G+ V    D +     ++     D++ TDV +PG +   ++A   +   P+ AVL  +
Sbjct: 740 DLGYRVLTARDAQAGLTVVESGIPIDVIFTDVVMPGSLKSREMARRAQERLPNLAVLFTS 799

Query: 510 GYDLAHSTAKARPHRRTELLAKPFDLQALAQALERLLGSTAQ 551
           GY         +     ELL+KP+  +ALA+ L  ++ +  Q
Sbjct: 800 GYTENSIVHGGKLDAGVELLSKPYTREALARRLRHVIANRKQ 841



 Score = 57.8 bits (138), Expect = 2e-12
 Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 6/138 (4%)

Query: 407 AAASPSPHVEGPAPAASLQQRVCKVMLVEDEPALRLVMLEVLLDQGHEVQAFEDGRQAYK 466
           AA +    +   A A   + R  +V+LVED+  +R+   E+L D G  V    +  QA +
Sbjct: 850 AATNGYSKLSQTASAVDSENRSIRVLLVEDDELIRMNSTEMLSDSGFAVVEAGNAAQALE 909

Query: 467 ALQEAPAPDLLITDVGLPGGIDGYQLADACRGIAPHAAVLLITGYDLAHSTAKARPHRRT 526
            ++  P  D+L+TD+GLP    G   A+A R   P  A++  TG     S          
Sbjct: 910 VIEADPI-DVLVTDLGLPDMKGGELAAEALRR-KPGLAIVFATG----DSHLPEGAPESA 963

Query: 527 ELLAKPFDLQALAQALER 544
            LL KP+D Q +  A+ER
Sbjct: 964 VLLTKPYDEQQIVAAVER 981



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 43/165 (26%), Positives = 62/165 (37%), Gaps = 30/165 (18%)

Query: 38  GELLDNSVANVFAADRSMRLLAINRTARETFERYRGFVP-QVG----DYVPQFLTD---- 88
           G  +D  +  V      +R L     +R    R    +P  VG    DYV +F  D    
Sbjct: 142 GGTVDGVLCTVLENTDKVRALEALEQSRMELSRLTNALPILVGYVDRDYVYRFANDGYLE 201

Query: 89  -----QPDIMGRLAP-------------IWPRILAGEAFI-DTVTFGLDDAPRHYEIRYH 129
                  +++GR  P                R LAGE  + DTV    D + R  EI Y 
Sbjct: 202 WFGRRAEEVIGRSVPDIVGAAFFEARRTYLDRALAGEKIVSDTVIRRPDGSLRAAEISYV 261

Query: 130 PWLDAQQRIQGGYLFAYDITQRVTEQERLQQAEEALRQAQKMEAV 174
           P   +   I G Y+   DI +R   ++ +  +    R A  +EAV
Sbjct: 262 PRYISDGSIDGIYVLIIDIEERKRSEQEILISNNRFRAA--VEAV 304