Pairwise Alignments

Query, 328 a.a., putative ABC transporter, periplasmic substrate-binding protein from Pseudomonas putida KT2440

Subject, 342 a.a., ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) from Variovorax sp. SCN45

 Score = 92.4 bits (228), Expect = 1e-23
 Identities = 84/308 (27%), Positives = 134/308 (43%), Gaps = 14/308 (4%)

Query: 12  RRLLIGGLLASVASALLPWSEAIAD----DARTLRIGYQKFNSINILKGSGALEKALAPQ 67
           RR L+    A  A+A   W+ A A        TLR+G  K     +L  SG      A  
Sbjct: 18  RRRLLQAAAALGAAASAGWTRAAAPATDLSGVTLRVGTYKGLWRPLLTASGQ-----ANT 72

Query: 68  GVKVSWHEFAAGPQLLEALSTGAIDLGHAADAPSVFAQAAGKPVVYLAAEQPYPRGIGLV 127
             K+ W E   G   +EA++  A+DLG  ++ P VFA      V  +A           +
Sbjct: 73  PYKIDWRELNNGVLHIEAINGDALDLGSGSEIPPVFAARQKSSVRLVAVTHEDLNNQATL 132

Query: 128 VREQDHLASVQDLKGKRVATGRGWNAQYLLAVALQQAGLSYKDITPAYVNNAADAVAALQ 187
            R+   + ++ D KGKRV   R   + Y LA  L +AGLS+ DI  A     +D ++A  
Sbjct: 133 ARKDAPIRTIADFKGKRVGYVRATTSHYYLAKQLAEAGLSFSDI-QAVSLTPSDGLSAFA 191

Query: 188 SGSVQAVTLWDPFLAAAESQPGLKNLRDGSG-LSNNRTFYLSTASFAD-QHRALLKTFFA 245
            G + A  ++      A  Q G + ++ G G LS N   Y +  +  D   RA L     
Sbjct: 192 RGDLDAWAIYGYNGQLARIQYGARVIKTGVGYLSGNFPIYANPRALDDAPRRAALADLLQ 251

Query: 246 ELGKVSQWANAKPAEVAALLAPQLGIST-QVLEVASER-RNYNAVAITPQIVAEQQKLAD 303
            L +   W+N      A   + +  +    ++E+ + R  +Y+   ++  +V   Q +AD
Sbjct: 252 RLQRAFAWSNGNFLTYARAQSAETRVPVGDIVELFNGRSSDYSLGPVSDAVVRSHQDVAD 311

Query: 304 TFQGLGLI 311
           TF  +G++
Sbjct: 312 TFLKIGVL 319