Pairwise Alignments

Query, 328 a.a., putative ABC transporter, periplasmic substrate-binding protein from Pseudomonas putida KT2440

Subject, 329 a.a., ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) from Variovorax sp. SCN45

 Score =  102 bits (254), Expect = 1e-26
 Identities = 92/306 (30%), Positives = 139/306 (45%), Gaps = 12/306 (3%)

Query: 17  GGLLASVASALLPWSEAIADDARTLRIGYQKFNSINILKGSGALEKALAPQGVKVSWHEF 76
           G  L+  A+  L  S A A    TL +G Q     ++ + S ALE A         W  F
Sbjct: 18  GTALSLAAAGSLRASFAQAQPQTTLVLGDQAGGLRSLFEASRALEGA----PFAYRWANF 73

Query: 77  AAGPQLLEALSTGAIDLGHAADAPSVFAQAAGK-PVVYLAAEQPYPRGIGLVVREQDHLA 135
                L EA    A+D   A D P V A A GK P+  +A        +G+VV+    L 
Sbjct: 74  QGAAPLFEAQRGAAVDTAMAGDLP-VLAAAVGKTPLKIVATRVGKADSLGIVVQPDSPLR 132

Query: 136 SVQDLKGKR--VATGRGWNAQYLLAVALQQAGLSYKDITPAYVNNAADAVAALQSGSVQA 193
           SV DL+GK   V++ RG  +QY L  AL++AG+  +++T  +V    DA AA  S  + A
Sbjct: 133 SVTDLRGKTVIVSSARGSISQYQLYGALEEAGVKREEVTVKFV-LPTDAAAAFASRQIDA 191

Query: 194 VTLWDPFLAAAESQPGLKNLRDGSGLSNNRTFY-LSTASFAD-QHRALLKTFFAELGKVS 251
             +++P+   A  Q G + LRDG G++    F   S  S AD   RA +  F   LG+  
Sbjct: 192 WAIFNPYYTIAVQQGG-RILRDGRGINTALGFITASEHSLADPARRAAIVQFLDRLGRAG 250

Query: 252 QWANAKPAEVAALLAPQLGISTQVLEVASERRNYNAVAITPQIVAEQQKLADTFQGLGLI 311
            WA A P   A   +    +  +   + + R +     ++   +   Q +AD     G++
Sbjct: 251 DWALANPEAYAQSYSQLTRLPIEASRIITARASVAGRPVSEADIVALQAVADRSARDGIL 310

Query: 312 PRKLQV 317
           P ++ V
Sbjct: 311 PARVDV 316