Pairwise Alignments

Query, 328 a.a., putative ABC transporter, periplasmic substrate-binding protein from Pseudomonas putida KT2440

Subject, 324 a.a., ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) from Variovorax sp. SCN45

 Score =  226 bits (577), Expect = 5e-64
 Identities = 128/315 (40%), Positives = 186/315 (59%), Gaps = 5/315 (1%)

Query: 3   MPKHAFSPLRRLLIGGLLASVASALLPWSEAIADDARTLRIGYQKFNS-INILKGSGALE 61
           M  H+ S  RR  I  L A  + A+L  ++       T+R+GYQK ++ I +LK  G LE
Sbjct: 1   MTTHSSSISRRTAIATLAALGSGAVL--AQGAGSRPVTVRLGYQKSSTLIAVLKAQGVLE 58

Query: 62  KALAPQGVKVSWHEFAAGPQLLEALSTGAIDLG-HAADAPSVFAQAAGKPVVYLAAEQPY 120
           K LAP    +SWHEF +G  LLEAL+   +D+    AD   VFAQAAG  + ++A E P 
Sbjct: 59  KQLAPLNATLSWHEFTSGLPLLEALNLDNLDISADVADTVPVFAQAAGADLTFIAQEAPS 118

Query: 121 PRGIGLVVREQDHLASVQDLKGKRVATGRGWNAQYLLAVALQQAGLSYKDITPAYVNNAA 180
           P    +VVRE   + +V DLKGK+V   +   A YLL  AL +AGLS++DI PAY+   A
Sbjct: 119 PAAQAIVVREDSPIKTVADLKGKKVGFAKAAGAHYLLIAALDKAGLSFRDIEPAYLT-PA 177

Query: 181 DAVAALQSGSVQAVTLWDPFLAAAESQPGLKNLRDGSGLSNNRTFYLSTASFADQHRALL 240
           D  AA + G++ A  +WDPFLAAA+ Q  ++ L DG+G+++ + +YL++  FA     +L
Sbjct: 178 DGRAAFEKGAIDAWVVWDPFLAAAQRQSKVRVLADGAGIASYQRYYLASTKFAKARPDVL 237

Query: 241 KTFFAELGKVSQWANAKPAEVAALLAPQLGISTQVLEVASERRNYNAVAITPQIVAEQQK 300
           +  +AEL K  +W    P + A LLAP  G+    +E A+ RR+Y    +  + + EQQ+
Sbjct: 238 RVVYAELEKTGKWVKQNPKDAATLLAPVWGLDAATIEQANGRRSYAVRPVVAEGLTEQQR 297

Query: 301 LADTFQGLGLIPRKL 315
           +AD F    L+PRK+
Sbjct: 298 IADAFFAEKLLPRKI 312