Pairwise Alignments

Query, 328 a.a., putative ABC transporter, periplasmic substrate-binding protein from Pseudomonas putida KT2440

Subject, 321 a.a., ABC transporter, substrate binding protein (aliphatic sulfonate) from Agrobacterium fabrum C58

 Score =  193 bits (490), Expect = 5e-54
 Identities = 115/314 (36%), Positives = 174/314 (55%), Gaps = 4/314 (1%)

Query: 12  RRLLIGGLLASVASALLPWSEAIADDARTLRIGYQKFNSINILKGSGALEKALAPQGVKV 71
           RR  +G L  S  +  LP          TLRIG+QK   I + K  GALE  L  +G++V
Sbjct: 4   RRGTLGLLAGSTGAVFLPHIRRAGAATTTLRIGWQKNGVIALAKSQGALEALLKDRGIEV 63

Query: 72  SWHEFAAGPQLLEALSTGAIDLGHAADAPSVFAQAAGKPVVYLAAEQPYPRGIGLVVREQ 131
            W EF++GP LLEAL  GA+D+G   D P +FAQAAG  + Y+   +    G  ++V++ 
Sbjct: 64  KWSEFSSGPPLLEALGAGALDIGPTGDVPPLFAQAAGGNLRYVGTYKAAAGGSAILVQKD 123

Query: 132 DHLASVQDLKGKRVATGRGWNAQYLLAVALQQAGLSYKDITPAYVNNAADAVAALQSGSV 191
             L +++DLKGK+VA  RG +A  +   AL++AGL+  DITP  +    DA AA +SGS+
Sbjct: 124 SPLKTLEDLKGKKVAFKRGSSAHNVTVKALRKAGLTLSDITPVDL-APPDAAAAFRSGSI 182

Query: 192 QAVTLWDPFLAAAESQPGLKNLRDGSGLSNNRTFYLSTASFADQHRALLKTFFAELGKVS 251
            A ++WDP+ A AE +P  + L    G+ +  +++L+   F + +  L+     EL  V 
Sbjct: 183 DAWSIWDPYFAVAEKEPTTRVLSTAEGIVDPWSYFLANGDFVEANPDLVPLILKELANVG 242

Query: 252 QWANAKPAEVAALLAPQLGISTQVLEVASER--RNYNAVAITP-QIVAEQQKLADTFQGL 308
             A A     A  LA   G+   V +V+  R   +   V++ P + +A QQ LAD F  L
Sbjct: 243 AKAQANIDATAKSLAAITGVPEDVTKVSLTRPGADLGRVSLVPDEAIAYQQALADEFYDL 302

Query: 309 GLIPRKLQVAEAVY 322
            ++P+KL+V + V+
Sbjct: 303 KIVPKKLKVTDIVW 316