Pairwise Alignments

Query, 318 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 332 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

 Score = 60.8 bits (146), Expect = 4e-14
 Identities = 77/327 (23%), Positives = 137/327 (41%), Gaps = 28/327 (8%)

Query: 5   LSTHGWPQPERQVRWAEAISDTY-----FPLSLEFAAGQP-----FDGHLQRWSTPSTPL 54
           +ST    + +R ++W E +SD       +   LE     P     F G L+        L
Sbjct: 7   VSTDQVVRSDRLMKWKEFMSDHLGRTPEYIKRLEATHIDPLHNGNFQGRLEYGDLGQ--L 64

Query: 55  SLSRLRSSQLGYSR--SKAHIGQDHEAFYLVTVPHGSEVHFEQDGHQISCSPGGFIVERG 112
              R+ +S   YSR  SKA    D     ++ V   S  HFEQ     + +P   ++   
Sbjct: 65  RFCRMTASAHRYSRHLSKALDVVDTPRMLILQVAGVS--HFEQGQQSSTVAPDEMLLVDC 122

Query: 113 DAPYRFHYGTQNDLWVLKLPERALKANLLGHKRYTRHCFDARQGLGRIFVEQLDLCARHF 172
             P+        + ++L     A +    G    +      R GLGR+ +  +      +
Sbjct: 123 GKPFSVTSTQGCEHFILLFQGAAGQLTQTGDMHLS-----GRNGLGRMLMHLISDAYHQY 177

Query: 173 DTSPPAARHLLLEQASATLLLALQ--QDERVLGSEGSNLSTLHLTRVEQYVQQNLGDPEL 230
                 +  L+ +  +  L  AL+  QDE+ L  +          R++ Y++++L D +L
Sbjct: 178 PLLNSQSAGLIGDSIAGLLNNALKNKQDEKQLDHD---FRFFKQNRLKAYIERHLADRDL 234

Query: 231 SPQTIAGACGLSLRYLHKLFAIT-PYTLNEWVRLQRLEAVHRQLRD-PHCHLAIGELAFR 288
           S + IA A   S+R LH+ F      +++E++  +RL      LR+    H ++ E+A+ 
Sbjct: 235 SIERIANAEQCSVRSLHRAFQDELGCSVSEYIWQRRLSRCAEDLRNREQAHRSLTEIAYA 294

Query: 289 WGFADQAQFTRAFRQQYGCTASEVRAT 315
           WG+   + F+R F+  +G +    R T
Sbjct: 295 WGYGSSSHFSRHFKSTFGMSPRLFRET 321