Pairwise Alignments

Query, 318 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 311 a.a., Transcriptional activator NphR from Pseudomonas lactucae CFBP13502

 Score = 65.9 bits (159), Expect = 1e-15
 Identities = 78/311 (25%), Positives = 129/311 (41%), Gaps = 21/311 (6%)

Query: 3   TELSTHGWPQPERQVRWAEAISDTYFPLSLEFAAGQPFDGHLQRWSTPSTPLSLSRLRSS 62
           T+ ST   P P R   W E +         +  +   FDG L   +     L L  L S 
Sbjct: 5   TQYSTLAVPAPRRFDYWKEVVCRHCLAADSKPLSQSSFDGALAVNTVGD--LDLCSLSSP 62

Query: 63  QLGYSRSKAHIGQDHEAFYLVTVPHGSEVHFEQDGHQISCSPGGFIVERGDAPYRFHYG- 121
              + RS+ H+         +          EQ   + + + G   +      +RF +G 
Sbjct: 63  LHYWERSERHLRSGPAEDLWLGFARKGHGQIEQGSRKANLAAGNLFLYDATQAFRFSFGG 122

Query: 122 TQNDLWVLKLPERALKANLLGHKRYTRHCFDARQGLGRIFVEQLDLCARHFDTSPPAAR- 180
           T+N L  +++P   L   L     YT    D R    R  V  L    R   ++P + + 
Sbjct: 123 TENHL--VRIPRALLTERLPRIAEYTAMVLDDR----RPGVIPLREMLRQAASTPASLQD 176

Query: 181 HLLLEQASATLLLALQQDERVLGSEGSNLSTLHLT-----RVEQYVQQNLGDPELSPQTI 235
             + ++ SA LL     D  VL  E  +L+T H       R+ +Y+Q++L +P+LS + I
Sbjct: 177 EHIAKRYSAALL-----DLLVLSLELQDLNTTHQELDLYGRIMKYIQRHLTEPDLSIEVI 231

Query: 236 AGACGLSLRYLHKLFAITPYTLNEWVRLQRLEAVHRQLRDPHCHLAIGELAFRWGFADQA 295
           A A  +S R + + FA    T    +  +RL A    +       ++ + A  +GF+D +
Sbjct: 232 AQAHNVSTRTVTRAFARYQKTPVAQIWKERLNASREAIERGQVR-SVSQAALDFGFSDFS 290

Query: 296 QFTRAFRQQYG 306
            F+ AFR+ +G
Sbjct: 291 HFSHAFRKAFG 301