Pairwise Alignments

Query, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 605 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  336 bits (861), Expect = 2e-96
 Identities = 232/620 (37%), Positives = 330/620 (53%), Gaps = 46/620 (7%)

Query: 38  IDASWRRSLGHGLDC--------LQGEQVGLGLEQGHDLRLLLERNRLLIDAVTPELDYL 89
           I  SWRR    GLD         L  E +   LE  H L     +       V P  + +
Sbjct: 11  IQESWRRCRAFGLDHQSTPSFDQLPAEGISQLLESQHSLVQTTHQE------VLPYYENI 64

Query: 90  VARQGKAGIVILGDAQANVLAIEGQKHVLQREGLRDLHPGSCWSESLRGTNAIGTAVVEG 149
           ++      +++L D Q  VL   G +  +  +  R  +PG+ W E   GTNAIGTA+   
Sbjct: 65  LSNSNC--LIMLADNQGQVLTSWGTQRFIDPKLARGFNPGASWMERSSGTNAIGTALACA 122

Query: 150 RPTLINCGEHYLDRLSPFSCTSVPLRDPRGEVIGVLDITREGVMAQPQDSLSTLMLAAGN 209
           +   I   EH+L      + ++ P+ D + E+I VLD++ +  +  P  +L  + + +  
Sbjct: 123 QAVHIEHDEHFLKANRFMTGSAAPIFDAQREIIAVLDVSSDSYLP-PSHTLGMVKMMSQT 181

Query: 210 IESRLF-GLCHPDQLVLAFHSRPQYLNSAWHGLLALSLDGEVLAANDGACQLLQVPRHEL 268
           +E+RL   L   +   L F++    L+S W GLL     G+VL+AN  A  LL +     
Sbjct: 182 VENRLILNLFRGEHFQLTFNTGLSNLDSQWAGLLIFDESGQVLSANRRADNLLGIS---- 237

Query: 269 IGRRSTDLLGERSPAFIARLWQGGVSSVQTAKGEFYFRAL-----QLPRHGRV----TPS 319
           + R   D L + S   +    +G   S+Q A G   F+ +     Q+P   RV    TP 
Sbjct: 238 LSRVMIDSLFKVSLLELLNQPEGLPFSLQAA-GRNRFQCVLRRPKQMPVQARVFTEPTPP 296

Query: 320 TPSSKPALSKQSPALDALAGGDQRLARNLRMARQGLGNGLPVLLLGETGTGKEVVARALH 379
           TP+S          L  L  GD R+ + +R A + L   +P+L+ GETG GKEV  +ALH
Sbjct: 297 TPASI--------GLKTLHFGDVRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALH 348

Query: 380 QASPRADKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRGGMVGRLMQAHGGTLFLDEI 439
           QAS R+ K F+AVNCAAIP  L+ESELFGY +GAFTG+ + G +G + +A  GTLFLDEI
Sbjct: 349 QASSRSQKAFIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEI 408

Query: 440 GDMPLALQARLLRVLQERRVAPLGAGDEQDIDVALICATHRDLKRLVQEQHFREDLFYRV 499
           GDMPL  QARLLRVLQER V P+G+ +   +D+ +I AT+R L+ LVQ   FREDL+YR+
Sbjct: 409 GDMPLPTQARLLRVLQERCVQPVGSSELFPVDLRIISATNRALRELVQAGRFREDLYYRI 468

Query: 500 NGVSLRLPALRERDDLAAIIQGLLD--KADARGVTLDPALTALLEGFDWPGNIRQLEMVV 557
            G++L LP LRER D  A+ Q L    +   +   L   + AL E   WPGN+RQ+  V+
Sbjct: 469 GGLTLELPPLRERTDKQALFQQLWQQHREPTQWAGLSAEVLALFEQHPWPGNLRQVSSVL 528

Query: 558 RTALAMREDGEQVLTLDHL-TDCLLDELASSAAPSGSLKDSELEQIRGALARHQGNVSAA 616
           + ALAM E  EQ +  +HL  D  +D       P+    D  ++ +   L    GN+S  
Sbjct: 529 QVALAMAE--EQPIRAEHLPDDFFVDLKVDPPLPASEYLDDSID-LNQRLKAAGGNISHL 585

Query: 617 AAALGISRATLYRKLKQLRG 636
           A  LG+SR TLY++L+Q  G
Sbjct: 586 ARELGVSRNTLYKRLRQHEG 605