Pairwise Alignments

Query, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 654 a.a., ATPase AAA from Pseudomonas simiae WCS417

 Score =  242 bits (618), Expect = 3e-68
 Identities = 218/650 (33%), Positives = 308/650 (47%), Gaps = 83/650 (12%)

Query: 23  LASEGELPLGMLRDEIDASWRRSLGHGLDCLQGEQVGLGLEQGHDLRLLLERNRLLIDAV 82
           LA + E P   +R  I ASWRRS+  G+D        +  +    L      +R+LI A 
Sbjct: 37  LAGQVERP-AHVRQVIWASWRRSVEAGIDPADNAYRFVAADT---LAATQADHRVLIAAA 92

Query: 83  TPELDYLVARQGKAGIVILGDAQANVLAIEGQKHVLQREGLRDLHP-GSCWSESLRGTNA 141
              +  L+A   + G + L DA    L   G           D+ P GS   ES++GTN 
Sbjct: 93  AQVMHGLLAYNPR-GHINLTDADGTTLYFCGL----------DITPVGSRLLESVQGTNC 141

Query: 142 IGTAVVEGRPTLINCGEHYLDRLSP--FSCTSVPLRDPRGEVIGVLDITREGVMAQPQDS 199
            G A+ E     +   E++   L      C + P+++ +G+ + +L +T E        +
Sbjct: 142 TGLALAEDHLVYVLAEENFGIGLRQRRMHCAAAPIKNTQGQTVAMLTLTAEPGWFHFH-T 200

Query: 200 LSTLMLAAGNIESR--LFGLCHPDQLVLAFHSRPQYLNSAWHGLLALSLDGEVLAANDGA 257
           L T+  AA  +  +  L GL    Q VL      + LN    GL+ L   G + A N  A
Sbjct: 201 LGTVQAAAEAVSRQMALHGLLEEQQTVL------EVLNE---GLVVLDERGCIKALNRYA 251

Query: 258 CQLLQVPRHELIGR--------RSTDLLGE----RSPAF-------------IARLWQGG 292
            QL  V   ELIGR          +D +GE    R   F             +  L QGG
Sbjct: 252 RQLFGVGL-ELIGRPFQQLGRSELSDSMGEAVRDRDCTFHLHNRSQLACLVSVCPLEQGG 310

Query: 293 VSSVQTAKGEFYFRALQLPRHGRVTPSTPSSKPALSKQSPALDALAGGDQRLARNLRMAR 352
           V              + L  + R+   T   +   ++ S   D + G  + +   L + R
Sbjct: 311 V-------------IVSLRENRRIREIT--RRIIGTQASYTFDTIQGSSRAIQDALHLGR 355

Query: 353 QGLGNGLPVLLLGETGTGKEVVARALHQASPRADKPFVAVNCAAIPEGLIESELFGYREG 412
               +    L+LGE+GTGKE+ A+A+H  S R + PFVAVNC AIP  L++SELFG+ EG
Sbjct: 356 IASRSDSTTLILGESGTGKELFAQAIHNGSDRCNGPFVAVNCGAIPRDLVQSELFGHVEG 415

Query: 413 AFTGSRRGGMVGRLMQAHGGTLFLDEIGDMPLALQARLLRVLQERRVAPLGAGDEQDIDV 472
           AFTGS RGG  G+   A GGT+FLDEIGDM    Q  LLRVLQE  +  +GA + + +DV
Sbjct: 416 AFTGSARGGSAGKFELADGGTIFLDEIGDMSFDAQVSLLRVLQEGEITRVGAKNSRQVDV 475

Query: 473 ALICATHRDLKRLVQEQHFREDLFYRVNGVSLRLPALR-ERDDLAAIIQGLLDKADARGV 531
            +I ATHR+L + V +  FREDL+YR+N ++L +P LR  R+D+  + +  L +  AR +
Sbjct: 476 RIIAATHRNLSQAVAQGAFREDLYYRLNVLNLTVPPLRMRREDIPLLARHFLARC-ARSL 534

Query: 532 T-----LDPALTALLEGFDWPGNIRQLEMVVR--TALAMREDGEQV-LTLDHLTDCLLDE 583
                   P   ALL  + WPGN+R+LE  +   T LAM    E V L L++     L  
Sbjct: 535 RKSVQGFSPEAMALLSAYGWPGNVRELENSIERATNLAMGALIEPVDLPLENRQRAPLRA 594

Query: 584 LASSAAPSGSLKDSELEQIRGALARHQGNVSAAAAALGISRATLYRKLKQ 633
               AA    L   E   I  AL    GN+  AA  L +SR  LY K+ +
Sbjct: 595 YEPQAAQ--DLSSHERHAIVAALTNTGGNIRLAARQLNVSRGGLYNKMSR 642