Pairwise Alignments

Query, 1042 a.a., Multidrug resistance protein MexB from Pseudomonas putida KT2440

Subject, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

 Score = 1221 bits (3158), Expect = 0.0
 Identities = 630/1031 (61%), Positives = 780/1031 (75%), Gaps = 4/1031 (0%)

Query: 1    MPQFFIDRPVFAWVVALFILLAGALAIPQLPVAQYPNVAPPQVEIYAVYPGASAATMDES 60
            M +FFI RP FAWVVALFI LAG L IP LPVAQYPNVAPPQ+ I A YPGASA  M ES
Sbjct: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60

Query: 61   VVSLIEQELNGADNLLYFES-QSSLGSATITATFAPGTHPDLAQVDVQNRLKVVESRLPR 119
            V S+IEQ LNGA  LLY+ES  +S G A +  TF PGT PD+AQVDVQNRLK  E+R+P+
Sbjct: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120

Query: 120  PVTQQGLQVEKVSTGFLLLATLTSEDGKL-DETALSDILARNVMDEIRRLKGVGKAQLYG 178
             V  QGL+VE+ S+GFLL+  LTS  G   D TAL+D  ARN+ +E+ R+ GVGK Q + 
Sbjct: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180

Query: 179  SERAMRIWIDPRKLIGFNLTPNDVAEAIAAQNAQVAPGSIGDLPSRSTQEITANVVVKGQ 238
            SE AMR+W+DP+KL+G+ L+ +D+  AI  QN QV  GS G  P  S QE+TA + V+G 
Sbjct: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240

Query: 239  LSSPDEFAAIVLRANPDGSTVTIGDVARVEIGAQEYQYGTRLNGKPATAFSVQLSPGANA 298
            L +P+ FA IVLRANPDGS+V +GDVAR+ IG++ Y    RLNG PA A +VQL+PGANA
Sbjct: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300

Query: 299  METATLVRAKMQDLARYFPEGVKYDIPYDTSPFVKVSIEQVINTLFEAMLLVFAVMFLFL 358
            ++TATLV+ ++ +L+++FPEGV+Y +PYDTS FV V+IE+VI+TL EAM+LVF VMFLFL
Sbjct: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360

Query: 359  QNLRYTLIPTLVVPVALMGTFAVMLAMGFSVNVLTLFGMVLAIGILVDDAIVVVENVERI 418
            QN+RYTL+P++VVPV L+GT  +M  +GFSVN++T+FGMVLAIGILVDDAIVVVENVER+
Sbjct: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420

Query: 419  MAEEGLPPKQATRKAMGQISGAIVGITLVLVAVFLPMAFMQGSVGVIYQQFSLSMAVSIL 478
            MAEEGL P +AT KAMGQ+SGAI+GITLVL AVFLP+AFM GSVGVIYQQFS+S+AVSIL
Sbjct: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480

Query: 479  FSAFLALSLTPALCATLLKPVAKGEHHERKGFFGWFNRRFESMSNGYQRWVVQALKRSGR 538
            FS FLAL+ TPALCATLLKPV  G HHE+ GFFG FNR F  ++  Y     + + R+GR
Sbjct: 481  FSGFLALTFTPALCATLLKPVPHG-HHEKAGFFGAFNRGFARVTERYSLLNSELVARAGR 539

Query: 539  YLLVYAVLLAVLGYGFSQLPTAFLPTEDQGYTITDIQLPPGASRMRTEQVAAQIEAHNAE 598
            ++L Y  +L VLGY + +LP AF+P ED GY++ D+QLPPGASR+RT+  A  +E     
Sbjct: 540  WMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLMS 599

Query: 599  EPGVGNTTLILGFSFSGSGQNAALAFTTLKDWSERGADDSAQSIADRATMAFTQLKDAIA 658
               V N+ ++ GFSFSG G NAALAF T KDWS+R    SA++        F    D   
Sbjct: 600  RDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRDKAQSAEAETAAINAQFAANGDGAI 659

Query: 659  YSVLPPPIDGLGESTGFEFRLQDRGGMGHAELMAARDQLLESASKSKVLTNVREASLAES 718
             +V+PPPIDGLG S GF  RL DRGG+G   L+AARDQLL  A+ + V+       LAE+
Sbjct: 660  TAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMMEGLAEA 719

Query: 719  PQVQLEIDRRQANALGVSFADIGTVLDVAVGSSYVNDFPNQGRMQRVVVQAEGDQRSQVE 778
            PQ++L IDR +A ALGVSF  I + L  A GS+ +NDF N GR QRVVVQAE  +R   E
Sbjct: 720  PQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGERMTPE 779

Query: 779  DLLNIHVRNDSGKMVPLGAFVQARWVSGPVQLTRYNGYPAVSISGEPAAGYSSGEAMAEV 838
             +L ++  N +G+ VP  AFV  +W  GPVQL RYNGYP++ I+G+ + G+S+G+AMAE+
Sbjct: 780  SVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQAMAEM 839

Query: 839  ERLVAQLPAGTGLEWTGLSLQERLSGSQAPLLMALSLLVVFLCLAALYESWSIPTAVLLV 898
            ERLV++LP G G  WTGLS QE++S  QA  L AL++LVVFL L ALYESW+IP  V+L+
Sbjct: 840  ERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPLTVMLI 899

Query: 899  VPLGVLGAVLAVTLRGMPNDVFFKVGLITLIGLSAKNAILIIEFAKHLVDQGVDAADAAV 958
            VP+G LGAV AVTL GMPNDV+FKVGLIT+IGL+AKNAILI+EFAK L ++G    DAA+
Sbjct: 900  VPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSLCDAAI 959

Query: 959  QAARLRLRPIVMTSLAFILGVVPLAIASGASSASQQAIGTGVIGGMLSAT-LAVVFVPVF 1017
            +AARLR RPIVMTS+AFILGVVPLAIASGA +ASQ+AIGTGVIGGMLSAT L VVFVPV 
Sbjct: 960  EAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGVVFVPVC 1019

Query: 1018 FVVVMRLSGRR 1028
            FV V+ L  R+
Sbjct: 1020 FVWVLTLLKRK 1030