Pairwise Alignments

Query, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 380 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  508 bits (1307), Expect = e-148
 Identities = 261/370 (70%), Positives = 310/370 (83%), Gaps = 1/370 (0%)

Query: 11  PLALMALLSLSLAGCSDSAEPDEQAPTAQVRVETLQLQPLAISSELSGRILAPRTAEVRA 70
           P  L+AL +L+L+ C DSA    + P A+VRVETL+ +PLAI+SELSGRI APR AEVRA
Sbjct: 8   PFCLLAL-TLALSACGDSAAEAPEMPLAKVRVETLEAKPLAITSELSGRIAAPRIAEVRA 66

Query: 71  RVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEATRYQARLQEQRYR 130
           RVAGVV++RV++EG DVKQGDVLF IDPAPFKAD DSA+A L+KAEA  ++ARLQEQRY 
Sbjct: 67  RVAGVVMQRVFKEGHDVKQGDVLFRIDPAPFKADLDSAQANLSKAEADAFKARLQEQRYS 126

Query: 131 ELVDDKAVSRQEYDNAKASFLQADAEVAEARAALERARLNLGYATVTAPISGRIGRAQVT 190
           +LV+  A+S Q+YDNA+A+  Q +AEVA  +AA+ERARLNLGYATVTAPISGRIGRA VT
Sbjct: 127 QLVEGNAISGQDYDNARAAVRQTNAEVAANKAAVERARLNLGYATVTAPISGRIGRALVT 186

Query: 191 EGALVGQNETTPLATIQQLDPIHADVTQSTRELNALRRALRAGELQQVGDGQARATLIQD 250
           EGALVGQNE TPLA IQQLDPIHAD+TQSTRELN LRRA RAG L+QVG  QA+ATLI+D
Sbjct: 187 EGALVGQNEATPLALIQQLDPIHADLTQSTRELNDLRRAFRAGSLKQVGQDQAKATLIED 246

Query: 251 DGSAYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVRLEQAVQPKGLSVP 310
           DGS YPLPGKLLF++ISVDP T QI LRSEFPNPDLDLLPGS+VRVRLEQAV  +G+SVP
Sbjct: 247 DGSLYPLPGKLLFAEISVDPGTGQIILRSEFPNPDLDLLPGSFVRVRLEQAVDKQGISVP 306

Query: 311 QRAILRDSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAAGERVVVEGLQHVKA 370
           QRAI RDSAG+P VL++D    VS + V LG+   DRWIVS GL  G+R++VEGLQH + 
Sbjct: 307 QRAITRDSAGIPMVLLLDAGQTVSQQPVELGAVINDRWIVSSGLKPGDRIIVEGLQHARP 366

Query: 371 GDQVQVDNTP 380
           G++V+VD++P
Sbjct: 367 GEKVEVDDSP 376