Pairwise Alignments

Query, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 384 a.a., antibiotic transporter from Pseudomonas simiae WCS417

 Score =  311 bits (798), Expect = 2e-89
 Identities = 172/381 (45%), Positives = 241/381 (63%), Gaps = 17/381 (4%)

Query: 5   LSPCLRPLALMALLSLSLAGCS-DSAEPDEQAPTAQVRVETLQLQPLAISSELSGRILAP 63
           L P +  L     L+  L+GC  + A P  Q P  QV V T+Q Q   ++SEL GR  A 
Sbjct: 3   LKPAVTALVTAVALASLLSGCKKEEAAPPAQIP--QVGVVTIQPQAFTLTSELPGRTTAY 60

Query: 64  RTAEVRARVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEATRYQAR 123
           R AEVR +V G++LKR+++EG DVK+G  L+ IDP+ ++A       TL  A+A+  Q++
Sbjct: 61  RIAEVRPQVNGIILKRLFKEGGDVKEGQQLYQIDPSVYEA-------TLKSAQASLTQSK 113

Query: 124 LQEQRYRELVDDKAVSRQEYDNAKASFLQADAEVAEARAALERARLNLGYATVTAPISGR 183
               RY++LVD++AVSRQEYD A A+ + ++A V       + A++N+ Y  V APISGR
Sbjct: 114 SISDRYKQLVDEQAVSRQEYDTAVANRMTSEANV-------QTAQINVRYTKVFAPISGR 166

Query: 184 IGRAQVTEGALVGQNETTPLATIQQLDPIHADVTQSTRELNALRRALRAGELQQVGDGQA 243
           IGR+ VTEGALV   +   +A IQQLDPI+ DVTQS+ E+  LRR L +G+L++ GD  A
Sbjct: 167 IGRSSVTEGALVSNGQADAMAVIQQLDPIYVDVTQSSAEMLKLRRDLASGQLEKAGDNAA 226

Query: 244 RATLIQDDGSAYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVRLEQAVQ 303
           +  L  +DGSAY + GKL FS++SVD +T  +TLR+ FPNPD  LLPG +V  +L+  V 
Sbjct: 227 KVKLTLEDGSAYGVDGKLEFSEVSVDQTTGSVTLRAVFPNPDHTLLPGMFVHAQLQAGVN 286

Query: 304 PKGLSVPQRAILRDSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAAGERVVVE 363
            K +  PQ+ + RD  G P  LVV+   +V  R++V     G  W+V +GL AG+RV+ E
Sbjct: 287 SKAILAPQQGVTRDLKGTPTALVVNADNKVEQRELVANRTYGAYWLVEKGLNAGDRVITE 346

Query: 364 GLQHVKAGDQVQVDNTPAAPP 384
           GLQ+VK G +V+V     A P
Sbjct: 347 GLQYVKPGAEVKVKAADNAKP 367