Pairwise Alignments

Query, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 414 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  291 bits (745), Expect = 2e-83
 Identities = 166/375 (44%), Positives = 239/375 (63%), Gaps = 9/375 (2%)

Query: 21  SLAGCSDSAEPDEQAP-------TAQVRVETLQLQPLAISSELSGRILAPRTAEVRARVA 73
           ++AGCS S+      P        AQV V T+Q +   +++ELSGR  +  +AE+R +V 
Sbjct: 31  AIAGCSGSSSSSSALPGAPQGLAAAQVGVVTVQPENQPVTTELSGRTRSRLSAEIRPQVG 90

Query: 74  GVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEATRYQARLQEQRYRELV 133
           G+V +R++ EG+ VK G VL+ +DPA +KA + SA+A++AK+EAT   A++  +R  EL 
Sbjct: 91  GIVQQRLFEEGALVKAGQVLYQLDPASYKAAYASAQASVAKSEATVNAAKVTARRNAELA 150

Query: 134 DDKAVSRQEYDNAKASFLQADAEVAEARAALERARLNLGYATVTAPISGRIGRAQVTEGA 193
             +AVS+Q  ++++A+  QA+A++  ARAALE AR+NLG+  +TAPI+GRI  + VT GA
Sbjct: 151 KIEAVSKQTSEDSQATLQQAEADLGVARAALETARINLGFTRITAPIAGRIEASTVTPGA 210

Query: 194 LVGQNETTPLATIQQLDPIHADVTQSTRELNALRRALRAGELQQVGDGQARAT--LIQDD 251
           LV  ++TT L T+QQLDP++ DVTQST EL  L+R L AG L+     +A A+  L+ +D
Sbjct: 211 LVTASQTTALTTVQQLDPVYVDVTQSTTELLQLQRELAAGTLKNGSADKAEASVKLLLED 270

Query: 252 GSAYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVRLEQAVQPKGLSVPQ 311
           G+ Y   G+L FS ++V+  T  +TLR   PNP+  LLPG Y+R  LEQ V    L VPQ
Sbjct: 271 GTTYAHAGRLQFSSVTVNEGTGAVTLRILVPNPERTLLPGMYMRAVLEQGVAEGALLVPQ 330

Query: 312 RAILRDSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAAGERVVVEGLQHVKAG 371
           + + R + G    LVV    +V  R + +  A G+RW V EGL AGERV+VEG   VKAG
Sbjct: 331 QGVTRTANGDASALVVTSENKVEKRALKVSRAVGNRWQVIEGLKAGERVIVEGSLKVKAG 390

Query: 372 DQVQVDNTPAAPPIA 386
           D V+  +   A  +A
Sbjct: 391 DTVKAVDAAGATTVA 405