Pairwise Alignments

Query, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  210 bits (535), Expect = 5e-59
 Identities = 140/368 (38%), Positives = 208/368 (56%), Gaps = 15/368 (4%)

Query: 13  ALMALLSLSLAGCSDSAEPDEQAPTAQ---VRVETLQLQPLAISSELSGRILAPRTAEVR 69
           AL+A+ +  +   S  AE +      Q   V V T+    +    E SGR+ A    +VR
Sbjct: 25  ALLAVAAAVVGMYSFKAEANNTPAAPQATPVSVATVASSEINAWDEFSGRLEAVERVDVR 84

Query: 70  ARVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEATRYQARLQEQRY 129
           +RVAG V    +REG+ VKQGD+L  IDPAP+ A+ + A A +A A+A +  +R +++R 
Sbjct: 85  SRVAGAVQAVHFREGALVKQGDLLVTIDPAPYAAEVERAEAQVASAQARQSFSRSEQERA 144

Query: 130 RELVDDKAVSRQEYDNAKASFLQADAEVAEARAALERARLNLGYATVTAPISGRIGRAQV 189
           + L DDKA++++E+D    +  +ADA +  A+A+L+ ARLNLGY  V AP+SGRIGR +V
Sbjct: 145 KRLWDDKAIAQREFDERVNAGREADANLRAAQASLQSARLNLGYTQVRAPVSGRIGRIEV 204

Query: 190 TEGALVGQNETTP-LATIQQLDPIH----ADVTQSTRELNALRRALRA-GELQQVGDGQA 243
           T G LV      P L T+  + PI+    AD    TR L  L     A G+++ +     
Sbjct: 205 TVGNLVAAGPGAPVLTTLVSVSPIYASFDADEQVITRALKDLPTGSSARGQIESIPVQMG 264

Query: 244 RATLIQDDGSAYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVRLEQAVQ 303
            A L   DG+  P  GKL   D  VD  +  + +R+ F N D  L+PG + R+R+ QA  
Sbjct: 265 TAGL---DGT--PFTGKLQLIDNQVDAKSGTVRVRASFDNKDGALIPGQFARIRMGQARS 319

Query: 304 PKGLSVPQRAILRDSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAAGERVVVE 363
              L V +RAI  D      V+VV + ++ + R+V LG++     +VS+GL AG+RV+V 
Sbjct: 320 DSALLVSERAIGTDQ-NKKFVMVVGEDSKATYREVTLGASINGLRVVSKGLKAGDRVIVN 378

Query: 364 GLQHVKAG 371
           GLQH++ G
Sbjct: 379 GLQHIRPG 386