Pairwise Alignments

Query, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 414 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  304 bits (778), Expect = 3e-87
 Identities = 171/380 (45%), Positives = 238/380 (62%), Gaps = 12/380 (3%)

Query: 12  LALMALLSLSLAGCSDSAEPDEQAPTAQVRVETLQLQPLAISSELSGRILAPRTAEVRAR 71
           LA  +  S+  +G S +A     AP  +V   TL+ + LA S+EL GR  AP  AE+R +
Sbjct: 21  LAACSRTSVETSGTSKAAA----APGKEVGTVTLKHETLAQSTELPGRTAAPVIAEIRPQ 76

Query: 72  VAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEATRYQARLQEQRYRE 131
           V G++ +R++ EGS VK G VL+ +DPAP +A H SA+A++ KAE+    AR   +R  E
Sbjct: 77  VGGILKERLFTEGSQVKAGQVLYQLDPAPLQAAHASAQASVRKAESALATARTVARRNAE 136

Query: 132 LVDDKAVSRQEYDNAKASFLQADAEVAEARAALERARLNLGYATVTAPISGRIGRAQVTE 191
           LV   A+SRQ +D ++A+  QA+A++  ARAA + AR+ LGY  +T+PI+G    + VT 
Sbjct: 137 LVKIDAISRQVFDESQAAEQQAEADLGVARAAEQTARIQLGYTRITSPIAGWAELSTVTP 196

Query: 192 GALVGQNETTPLATIQQLDPIHADVTQSTRELNALRRALRAGELQQVGDGQARATLIQDD 251
           GALV  N+   L T+QQLDPIH  VTQS+REL  L+R L +G LQ+  D +AR  L+ +D
Sbjct: 197 GALVTANQAAALTTVQQLDPIHVHVTQSSRELLRLKRELASGRLQRASDAEARIQLVLED 256

Query: 252 GSAYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVRLEQAVQPKGLSVPQ 311
           GS YP  G+L FS ++VD  T  +TLR+  PNPD  L+PG YVR  L++      L VPQ
Sbjct: 257 GSKYPHAGRLTFSGVTVDAGTGSVTLRAVVPNPDKLLMPGMYVRAVLQEGTDATALLVPQ 316

Query: 312 RAILRDSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAAGERVVVEGLQHVKAG 371
           +A+ R   G    LVVD   +V+ R + +G A G RW V EGLAAG+RV+ EG Q VK G
Sbjct: 317 QAVTRAPDGSASALVVDAENKVAKRPIQVGRAVGTRWQVLEGLAAGDRVMTEGSQRVKVG 376

Query: 372 DQVQV--------DNTPAAP 383
           ++V+V        + TP+ P
Sbjct: 377 EKVKVVDLGAKAANGTPSGP 396