Pairwise Alignments

Query, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 421 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  324 bits (830), Expect = 3e-93
 Identities = 180/372 (48%), Positives = 252/372 (67%), Gaps = 6/372 (1%)

Query: 3   TTLSPCLRPLALMALLSLSLAGCSDS----AEPDEQAPTAQVRVETLQLQPLAISSELSG 58
           ++ SP L  +A +ALL L+  G SD+      P    P  +V V       + + +EL G
Sbjct: 10  SSFSPRLATVAAVALLVLAGCGKSDAPAGAGAPGGAHPAPEVGVVVAAPGDVGLVTELPG 69

Query: 59  RILAPRTAEVRARVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEAT 118
           R+ A R A+VRAR +G++LKR +REGSDVK G +LF IDPAP  A   +A+ATLA+AEA 
Sbjct: 70  RLEASRVAQVRARASGILLKREFREGSDVKAGQLLFRIDPAPLAAALQNAQATLARAEAN 129

Query: 119 RYQARLQEQRYRELVDDKAVSRQEYDNAKASFLQADAEVAEARAALERARLNLGYATVTA 178
             QA+    RY+ LV+  AVS+QEY  A AS   A+A+VA  RAA++ A++NLGYA VT+
Sbjct: 130 AVQAKALADRYKPLVEANAVSKQEYATAVASQKTAEADVASGRAAVQTAKINLGYADVTS 189

Query: 179 PISGRIGRAQVTEGALVGQNETTPLATIQQLDPIHADVTQSTRELNALRRALRAGELQQV 238
           PISGRIGRA VTEGALVGQ E T LA +QQ++P++ + TQS  ++  LRRAL  G+ ++ 
Sbjct: 190 PISGRIGRALVTEGALVGQGEATELAVVQQINPVYVNFTQSATDVLKLRRALADGQYKRA 249

Query: 239 GDGQARAT-LIQDDGSAYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVR 297
           G  +A +  ++ +DGS Y L GKLLFSD++VD +T QI LR+E PNP  +LLPG YVRVR
Sbjct: 250 GSEEAASVRVVLEDGSEYALEGKLLFSDLTVDSTTGQIMLRAEVPNPKGELLPGLYVRVR 309

Query: 298 LEQAVQPKGLSVPQRAILRDSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAAG 357
           LEQA     +++PQ+A+ R   G   V VVD+  ++S R V + +A+ ++W+V +GL AG
Sbjct: 310 LEQAQATNAITLPQQAVTRTQQG-DTVTVVDKDGKLSKRNVKISAAKDNQWVVLDGLKAG 368

Query: 358 ERVVVEGLQHVK 369
           E+V+V+G Q ++
Sbjct: 369 EQVMVDGFQKLQ 380