Pairwise Alignments

Query, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

 Score =  311 bits (798), Expect = 2e-89
 Identities = 174/383 (45%), Positives = 242/383 (63%), Gaps = 22/383 (5%)

Query: 7   PCLRPLALMALLSLSLAGCS-DSAEPDEQAPTAQVRVETLQLQPLAISSELSGRILAPRT 65
           P +  L     L+  L+GC  + A P  QAP  QV V T+Q Q   ++SEL GR  A R 
Sbjct: 5   PAVTALVSAVALATLLSGCKKEEAAPAAQAP--QVGVVTIQPQAFTLTSELPGRTSAYRV 62

Query: 66  AEVRARVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEATRYQARLQ 125
           AEVR +V G++LKR+++EGS+VK+G  L+ IDPA ++A       TLA A+A     R  
Sbjct: 63  AEVRPQVNGIILKRLFKEGSEVKEGQQLYQIDPAVYEA-------TLANAKANLLATRSL 115

Query: 126 EQRYRELVDDKAVSRQEYDNAKASFLQADAEVAEARAALERARLNLGYATVTAPISGRIG 185
            +RY++L+D++AVS+QEYD+A A  LQA+A       +L+ A+++L Y  V APISGRIG
Sbjct: 116 AERYKQLIDEQAVSKQEYDDANAKRLQAEA-------SLKSAQIDLRYTKVLAPISGRIG 168

Query: 186 RAQVTEGALVGQNETTPLATIQQLDPIHADVTQSTRELNALRRALRAGELQQVGDGQARA 245
           R+  TEGALV   +T  +ATIQQLDPI+ DVTQST EL  LRR L +G+LQ+ GD  A  
Sbjct: 169 RSSFTEGALVSNGQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGDNAASV 228

Query: 246 TLIQDDGSAYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVRLEQAVQPK 305
            L+ +DGS +   G+L FS+++VD +T  +TLR+ FPNPD  LLPG +V  RL+  V   
Sbjct: 229 QLVLEDGSLFKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNAN 288

Query: 306 GLSVPQRAILRDSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAAGERVVVEGL 365
            +  PQ+ + RD  G P  LVV+Q  +V  RQ+      G  W++ EGL  G+R++ EGL
Sbjct: 289 AILAPQQGVTRDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGL 348

Query: 366 QHVKAGDQVQVDNT-----PAAP 383
           Q+V+ G +V+V +      PA P
Sbjct: 349 QYVRPGVEVKVSDATNVKKPAGP 371