Pairwise Alignments

Query, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 385 a.a., multidrug resistance efflux transporter (NCBI) from Escherichia coli BW25113

 Score =  267 bits (682), Expect = 4e-76
 Identities = 142/350 (40%), Positives = 215/350 (61%), Gaps = 1/350 (0%)

Query: 22  LAGCSDSAEPDEQAPTAQVRVETLQLQPLAISSELSGRILAPRTAEVRARVAGVVLKRVY 81
           L  C D +  +  A T +V V TL    + + SEL GR +    AE+R +V G+++KR +
Sbjct: 18  LTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNF 77

Query: 82  REGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEATRYQARLQEQRYRELVDDKAVSRQ 141
            EG  V QGD L+ IDPAP +A+ +SA+ +LAKA +T   AR+   R   L+    VSRQ
Sbjct: 78  IEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQ 137

Query: 142 EYDNAKASFLQADAEVAEARAALERARLNLGYATVTAPISGRIGRAQVTEGALVGQNETT 201
           +YD A+    +A+A V  A+AA+E+A +NL YA VT+PI+G  G++ VT GALV  N+  
Sbjct: 138 DYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQAD 197

Query: 202 PLATIQQLDPIHADVTQSTRELNALRRALRAGELQQVGDGQARATLIQDDGSAYPLPGKL 261
            L T+Q+LDPI+ D+TQS ++   ++  + +G+++QV  G     L  ++G  Y   G L
Sbjct: 198 SLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQV-QGSTPVQLNLENGKRYSQTGTL 256

Query: 262 LFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVRLEQAVQPKGLSVPQRAILRDSAGV 321
            FSD +VD +T  +TLR+ FPNP+ DLLPG YV   +++  +   L VPQ  +  ++ G 
Sbjct: 257 KFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGK 316

Query: 322 PKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAAGERVVVEGLQHVKAG 371
              L++D+   V  R++    A GD+W+V+ GL AG+RV+V GLQ ++ G
Sbjct: 317 ATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQRIRPG 366