Pairwise Alignments

Query, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 400 a.a., RND multidrug efflux membrane permease from Agrobacterium fabrum C58

 Score =  221 bits (562), Expect = 4e-62
 Identities = 135/379 (35%), Positives = 215/379 (56%), Gaps = 15/379 (3%)

Query: 5   LSPCLRPLALMALLSLSLAGCSDSAEPDEQA------PTAQVRVETLQLQPLAISSELSG 58
           +S  + PL     ++  LAGCSD  E  + A      P + V V  ++     +++ L G
Sbjct: 1   MSRRILPLFASLCVTAVLAGCSDGGESSKSAGQGAERPPSPVSVIVMKTSEYPLTTVLPG 60

Query: 59  RILAPRTAEVRARVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEAT 118
           R  A +TAE+R RV G++ +  ++EGS+VKQGDVL+ I+   + A+   A+A++AKAEA+
Sbjct: 61  RASAFQTAEIRPRVTGIIREIPFKEGSEVKQGDVLYQIEDNTYLAEVAQAKASVAKAEAS 120

Query: 119 RYQARLQEQRYRELVDDKAVSRQEYDNAKASFLQADAEVAEARAALERARLNLGYATVTA 178
              A+    RY  LV+  A ++ EY+NAK + LQA A+VA+ +AALE A +NL    V A
Sbjct: 121 VPSAQANLARYERLVNSGA-TQIEYENAKVTLLQAQADVAQTKAALETAEINLDLTKVRA 179

Query: 179 PISGRIGRAQVTEGALVGQNETTPLATIQQLDPIHADVTQSTRELNALRRALRAGELQQV 238
           P  G       + G +V  N+TT L T++++DPI+ D+ +S+  L  L++A+ +G+L   
Sbjct: 180 PFDGITSATAFSIGNVVTANQTTALTTLRRIDPIYIDLMESSTNLLRLKKAISSGQL--- 236

Query: 239 GDGQARAT---LIQDDGSAYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVR 295
             G  + T   L  +DG+ Y   GK+  SD++V  +T   ++R+ F NPD  LLPG+YVR
Sbjct: 237 -GGDTKETGIHLTLEDGTEYKHDGKIDMSDMAVSETTGTFSIRALFENPDDLLLPGTYVR 295

Query: 296 VRLEQAVQPKGLSVPQRAILRDSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLA 355
             L    + KG  +PQRA  R+++G      V    +V  R        G+ W+V+E + 
Sbjct: 296 ATLTIG-KEKGFRIPQRAASRNASGELTAKFVTAENKVETRTFPSSQQSGNAWLVTENVK 354

Query: 356 AGERVVVEGLQHVKAGDQV 374
            G++++V+G Q +  G  V
Sbjct: 355 DGDKLIVDGFQWIAEGATV 373