Pairwise Alignments

Query, 363 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 411 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score = 96.3 bits (238), Expect = 1e-24
 Identities = 80/224 (35%), Positives = 110/224 (49%), Gaps = 19/224 (8%)

Query: 142 AMVITWVMLNPFYHTRIEPDALEGAMLISY---AVFLSGLVSYSYLQIRKAKLHNFYLSK 198
           AMV+T   L   Y    E + L GA   S     V  +GL+    L         +   +
Sbjct: 154 AMVLTGQCL--LYIAASETERLSGAWRTSVWGNLVQFTGLIGSITLVFSVVIATTYEAIE 211

Query: 199 VLLEQAYVDALTDIPNRRSF-----MAQADRQLRMATSGQYLAMIDIDNFKRVNDRFGHD 253
                A +D LT++ NRR        AQ +R  + AT+   + + DID+FK +NDRFGH 
Sbjct: 212 KYRRYANLDPLTNLLNRRGLDAVLASAQGERLKKPATA---IILADIDHFKAINDRFGHS 268

Query: 254 VGDEVLKRVALHIKTSMADQA-FARLGGEEFAIFFEG--LDQQGA---EQRVAALCQRVR 307
            GD V+KR    +++    Q   ARLGGEEFA+      LD   A   + R +   +R  
Sbjct: 269 FGDLVIKRFGALVQSHTTTQGCVARLGGEEFAVLLPDTCLDDAIAAAEKMRRSFAAERWP 328

Query: 308 EDAGEHPVTISIGLAKVDRGESLTTALVRADQALYEAKHTGKDR 351
            D  E   T S G+A V+ GE+L+TA  RADQ LY AK  G++R
Sbjct: 329 CDRKESEFTASFGVALVEDGEALSTAFERADQFLYAAKRMGRNR 372