Pairwise Alignments

Query, 295 a.a., chloramphenicol-sensitive protein from Pseudomonas putida KT2440

Subject, 294 a.a., chloramphenical resistance permease RarD from Pseudomonas simiae WCS417

 Score =  124 bits (311), Expect = 3e-33
 Identities = 87/285 (30%), Positives = 145/285 (50%), Gaps = 19/285 (6%)

Query: 3   KGIVSSVMASCLFAVMYFYTSLLKPLDGEEIFGWRTLLTLPCLTLFMLVSKDWKRVG--- 59
           KG +  + A  ++ +   Y   +  +   EI   R L +     L ++V   WK  G   
Sbjct: 8   KGYILGLSAYVIWGLFPLYFKAIASVPAAEIIVHRVLWSALFGGLLLMV---WKHPGWFR 64

Query: 60  ELMGRVKRTPVLLLG--MVGTSWLMGVQLWLFLWAPLHGRSLEVSMGYFLLPLAMVLTGR 117
           EL    KR  +L L   ++  +WL       ++W+   GR LE S+GY++ PL  V+ G 
Sbjct: 65  ELRDNPKRLAILALSGSLIAGNWLT------YVWSVNTGRMLEASLGYYINPLVNVVLGM 118

Query: 118 LVYGERLSRLQTVAVACAALGVGHELYQNGSFAWETLLVTIGYPVYFVLRRRCRTDNLGG 177
           L+ GERL RLQ VAV  AA+GV  +++Q GS  W +L++ + +  Y ++R++     L G
Sbjct: 119 LILGERLRRLQWVAVGLAAVGVAQQVWQVGSLPWVSLVLALTFGFYGLIRKQAPVKALPG 178

Query: 178 LWCDMCLLLPWALYFVIQSPLSSADLQAH---PGLYVLVPILGAISASALIAYVLASRML 234
           L  +  +L+P A+ +++ +P + +   A       + LV   G ++   L+ +  A+R L
Sbjct: 179 LVVETWMLVPIAVAWLLFNPTAHSAQMAFWSTSEAWWLV-AAGPVTLIPLVCFNAAARHL 237

Query: 235 PFSLFGLLSYVEPVL-LVGVALLLGETIGPDQWLTYLPIWAAVLV 278
           P++  G L YV P L L+   LL GE + P     +  IWA ++V
Sbjct: 238 PYTALGFLQYVAPTLVLLEAVLLFGEHLAPSTLTAFAFIWAGLVV 282