Pairwise Alignments

Query, 705 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 991 a.a., two component sensor kinase/response regulator hybrid from Agrobacterium fabrum C58

 Score =  233 bits (595), Expect = 3e-65
 Identities = 197/644 (30%), Positives = 289/644 (44%), Gaps = 77/644 (11%)

Query: 103 RALPDALGMAFDTLWSDIWPAVGPWVFKALEGHSNFVEDPPLRIVRSEGAEPLWCAFGYA 162
           R++PD +G AF       + A   ++ +AL G    V D  +R  R +G+        Y 
Sbjct: 213 RSVPDIVGAAF-------FEARRTYLDRALAGEK-IVSDTVIR--RPDGSLRA-AEISYV 261

Query: 163 PLHDELGNVAGFLHTVIETTASVEAHRHWREQVQSFERQVAQHVAEREQFWLLSREAMMM 222
           P +   G++ G    +I+     E  R  +E + S  R  A   A     W  S +  M 
Sbjct: 262 PRYISDGSIDGIYVLIIDIE---ERKRSEQEILISNNRFRAAVEAVHGVLWTNSADGRM- 317

Query: 223 LTPELKLHGANPAWYRILGWTQEQVQAMSVMELVHPTERTEVRLAVSGLFQCSHAEQLEI 282
                   G  PAW  + G T E+ Q     + VHP +R     + +           E 
Sbjct: 318 -------RGEQPAWTAMTGQTPEEYQDFGWADAVHPEDRQGSVDSWNRAVAEKSTYLWEH 370

Query: 283 RLRHRDGHYHWF--RWSARFD--GSLLTAVG--RDITADREEA----------------- 319
           R+R  DG Y  F  R    FD  G++   VG   DIT  R+                   
Sbjct: 371 RVRRHDGVYRTFSIRGVPIFDKDGAIAEWVGVHTDITEQRQSEDTLKEHASNLEREIRHR 430

Query: 320 ------------------------ARQAEALMHNSERMEVVGQLAGGMGHEMNNLLSGIG 355
                                    RQ E  +  +++ME +GQL GG+ H+ NNLL  I 
Sbjct: 431 IRAEEQLRQLNEGLEARVEMEMAERRQTEKALQQAQKMESIGQLTGGVAHDFNNLLQVIA 490

Query: 356 GSLELLQRRLQEGRLERVEAYVDVARDSVQRAMDLTHRLIAFSRHQPLAPRPLDFNRQLR 415
           G+L+LL + +     ER E  ++ A   V R   L  +L+AF R Q L PR ++  R + 
Sbjct: 491 GNLQLLSKDVIGN--ERAERRLENALAGVHRGAKLASQLLAFGRRQALEPRVINIARFVT 548

Query: 416 LSEPLLLRALGAEMRLHWQLDVAPWAVSLDVPQLENALIHLCANAREACLEQGNVTISSV 475
             + LL R+LG  + +        W    D  Q+ENAL++L  NAR+A    G +TI   
Sbjct: 549 GMDDLLRRSLGEGIEVEVITSGGLWNTYADPNQVENALLNLAINARDAMEGHGKLTIEVG 608

Query: 476 NERLTAFFPDEGG-LPPGDYVALHVEDDGHGMAAADIARAFEPFYTTKPLGRGAGLGLSM 534
           N  L   +  +   +  G YV L V D G GM+   + + FEPF++TKP G+G GLGLSM
Sbjct: 609 NAVLDRDYARKHSEVSAGQYVMLAVTDTGSGMSPEILEKVFEPFFSTKPEGKGTGLGLSM 668

Query: 535 VYGFVRQSGGYAWIESTPEQGTRVSMLFPRSHEPVPDEPAPVPLSQRMARG--ERLLLVD 592
           VYGF +QS G+  I S   QGT V M  PRS     DE   V +      G  E +L+V+
Sbjct: 669 VYGFAKQSSGHVNIYSEVGQGTTVKMYLPRS---AADEDREVVMPTGPVEGGTETILVVE 725

Query: 593 DELDLRAVMREYLTERGFDVTDVGDANSALERFRHGGPFDLVITDIGLPGGFSGRQVAKA 652
           D+ ++R  + E L + G+ V    DA + L     G P D++ TD+ +PG    R++A+ 
Sbjct: 726 DDEEVRNTVVETLGDLGYRVLTARDAQAGLTVVESGIPIDVIFTDVVMPGSLKSREMARR 785

Query: 653 MRMQLAQQKILFITGYADQSIEAQLLDQPGTALLNKPFSLAHLA 696
            + +L    +LF +GY + SI        G  LL+KP++   LA
Sbjct: 786 AQERLPNLAVLFTSGYTENSIVHGGKLDAGVELLSKPYTREALA 829



 Score = 88.6 bits (218), Expect = 1e-21
 Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 2/144 (1%)

Query: 46  GERIAQFDWWRTSLGPLSRWPASLRIAVDMMHLSPFPCAVVWGADLCVVHNNGYRALRA- 104
           GE + +FDW +TSLGP+  WP +LR   + +  SP P  ++WG+D  +++N+GY  +   
Sbjct: 18  GELVRRFDWSKTSLGPICDWPQNLRQKANSVVNSPIPQVLMWGSDHVMIYNDGYAEIAGN 77

Query: 105 -LPDALGMAFDTLWSDIWPAVGPWVFKALEGHSNFVEDPPLRIVRSEGAEPLWCAFGYAP 163
             P ALG     +W +IW      +     G      D P+ ++R    E +     Y P
Sbjct: 78  YHPRALGGTVPGIWPEIWDWNSRILEAGFRGEVMAYRDQPMTLMRHGVPEEVIFDLFYTP 137

Query: 164 LHDELGNVAGFLHTVIETTASVEA 187
           +++E G V G L TV+E T  V A
Sbjct: 138 IYNEGGTVDGVLCTVLENTDKVRA 161



 Score = 50.8 bits (120), Expect = 3e-10
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 584 RGERLLLVDDELDLRAVMREYLTERGFDVTDVGDANSALERFRHGGPFDLVITDIGLPGG 643
           R  R+LLV+D+  +R    E L++ GF V + G+A  ALE      P D+++TD+GLP  
Sbjct: 870 RSIRVLLVEDDELIRMNSTEMLSDSGFAVVEAGNAAQALEVI-EADPIDVLVTDLGLPDM 928

Query: 644 FSGRQVAKAMRMQLAQQKILFITG 667
             G   A+A+R +     I+F TG
Sbjct: 929 KGGELAAEALRRK-PGLAIVFATG 951