Pairwise Alignments

Query, 1059 a.a., Multidrug efflux RND transporter MexF from Pseudomonas putida KT2440

Subject, 1069 a.a., Efflux pump membrane transporter BepE from Xanthobacter sp. DMC5

 Score =  887 bits (2293), Expect = 0.0
 Identities = 457/1055 (43%), Positives = 686/1055 (65%), Gaps = 16/1055 (1%)

Query: 4    SKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETV 63
            S+FFI RP+ + VL+LV ++ G +SL +LP+S+YP +VPPTV V  ++PGA+ K + +TV
Sbjct: 3    SRFFIERPVLSNVLALVFVLIGLVSLIRLPVSQYPNIVPPTVSVSTSYPGASAKTMIDTV 62

Query: 64   AAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKLPEE 123
            A P+EQ + GVE M+YM S S +DG  TL ++FA+GTD + AQV VQNRV      LP  
Sbjct: 63   ALPIEQQVNGVEGMIYMQSWSASDGTYTLVVSFAIGTDPNMAQVLVQNRVNIALASLPTA 122

Query: 124  VTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMG 183
            V   G+T+ +    +   V L SPD RYD L+L+NYAI+NI++EL R+ GV +V +FG G
Sbjct: 123  VQAQGVTILQKGTSILEFVTLISPDGRYDGLFLNNYAIINIQNELERVDGVANVAVFGAG 182

Query: 184  DYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRL 243
             Y++RVW+DP++  +  LT +DV  AI++Q++ V  GQLG PPAP + SFQ ++N  GRL
Sbjct: 183  TYAMRVWMDPDRMQAFGLTPTDVSNAIQKQSQIVTPGQLGLPPAPSNASFQYTVNVSGRL 242

Query: 244  VNEEEFENIIIRAGAD--GEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGSN 301
             + +++ENII++      G I R++DI RVELG+  Y+   + +N+PA  I IFQ P +N
Sbjct: 243  DDVKDYENIIVKVDNSDGGRIVRIRDIGRVELGAQSYSKDFMQDNKPAAGIGIFQLPAAN 302

Query: 302  AIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILF 361
            A++++  V AKM +LKK+FPEG+DY+I +D T+FV  SI+ V  TLFEA +LV++V++LF
Sbjct: 303  ALDVAKRVAAKMEDLKKNFPEGLDYAIPFDTTLFVTASIDEVWKTLFEAAILVLVVILLF 362

Query: 362  LQTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVER 421
            LQ WRA+++P   VPV++IG FA M   GF++N  +LF ++LAIGIVVDDAIV+VE V R
Sbjct: 363  LQDWRATLVPATTVPVTIIGAFAAMDAMGFTINLSTLFAIILAIGIVVDDAIVIVEGVAR 422

Query: 422  NIGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTV 481
            +I  G+    A +KAM E+ GP++   LVL +VF+PA+FI GL+GQ +KQFAL IA +  
Sbjct: 423  HIEEGMAGQPAAEKAMDELFGPVVGITLVLMSVFLPASFIPGLSGQMFKQFALVIAATAF 482

Query: 482  ISAFNSLTLSPALAAVLLKDHHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYVGGVR 541
            ISA N+ TL P   A+ L+    P+ R          ++++  FN  + +A H Y G + 
Sbjct: 483  ISAINAATLKPTQCALWLRQPVPPEKR----------NFIYRGFNAIYGKAEHWYTGVIS 532

Query: 542  RVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEAVIK 601
            R++  S + + +   LM +   G +  PT F+P +D+ Y +A  QLPDA++L+RT+ V+ 
Sbjct: 533  RMVHHSKLMVLIAIALMSVAGYGLTRIPTAFLPIEDQGYFLAHVQLPDASNLNRTKKVMA 592

Query: 602  RMSEIALKQPGVADSVAFPGLSI-NGFTNSPNSGIVFTPLKPFDER-KDPSQSAAAIAAA 659
             +SE   K PGV   +A  G+S+ +  +   N+G+ +  L P+D R     Q   ++   
Sbjct: 593  DVSERIRKVPGVQTVLAISGISVLDNSSTLANAGVTYITLTPWDVRYATKGQDLLSMYEN 652

Query: 660  LNAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDR-GNLGYEALYKETQNIIAKSHNV 718
            L    A +++A + I  PP +QG+G   GF +Q + R GN  Y+ L + T +++ K    
Sbjct: 653  LGKAVAGVEEAEVVILVPPAIQGIGNAAGFTMQPQIRNGNFDYQLLEQITASMVDKGRAQ 712

Query: 719  PELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGRTYQ 778
              L+ + +S++   PQ+   ++R KA+T G+ +  +F T+  YLGS Y N  N+FG  +Q
Sbjct: 713  SALSHVSSSFRAGAPQIQVEVNRIKAETLGITVGQVFSTISAYLGSTYVNQINKFGNVFQ 772

Query: 779  VNVQAEQQFRLDAEQIGQLKVRN-NLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEING 837
            V +QA+  FR+    + QLKVR+     MIPL T + +  T GP  +  YN + ++ I G
Sbjct: 773  VYIQADAGFRVTPADLMQLKVRSPTQNAMIPLGTVVDIKMTLGPPLISLYNLYPSSTIVG 832

Query: 838  AAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFLVL 897
              A G+SSGQA + +E++    LP G  FEWT ++YQ+   GN    VF L +LL + VL
Sbjct: 833  TNAAGFSSGQALSLMEQIAASTLPPGTGFEWTAMSYQEKAVGNQIYYVFGLAILLVYFVL 892

Query: 898  AAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEF 957
            A QYESW  P++VIL VP+ LL  ++ ++  G  NN++TQIGL++L+ LA KNAILIVE+
Sbjct: 893  AGQYESWIQPMSVILAVPLALLGTVSALLGLGVANNLYTQIGLVLLIALASKNAILIVEY 952

Query: 958  AKDEQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVAVFS 1017
            A++++A+G++ + A +EA RLR RPILMTS AFI+GV+PLVF++GAG+  R ++G+AV S
Sbjct: 953  AREKRAEGMEIMDAAVEASRLRFRPILMTSFAFILGVLPLVFATGAGANSRKSIGIAVVS 1012

Query: 1018 GMIGVTVFGLFLTPVFFFLIRRFVERRQARKAEHA 1052
            GM+  T   +   P F+ +++RF E R+ +K   A
Sbjct: 1013 GMLASTCLAVLFVPSFYTVLQRFEEGRKGKKKSSA 1047