Pairwise Alignments
Query, 1059 a.a., Multidrug efflux RND transporter MexF from Pseudomonas putida KT2440
Subject, 1053 a.a., multidrug transporter from Pseudomonas simiae WCS417
Score = 779 bits (2011), Expect = 0.0
Identities = 444/1062 (41%), Positives = 636/1062 (59%), Gaps = 32/1062 (3%)
Query: 4 SKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETV 63
SKFFI RPIFA V++LV+++ G++S+ +LPI++YP + P + ++ +PGA+ + + +TV
Sbjct: 2 SKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPAIAPTAIDIQVTYPGASAQTVQDTV 61
Query: 64 AAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKLPEE 123
+EQ + G++N+ Y+SS S +DG +T+T+TF GT+ D AQVQVQN++ P LP+E
Sbjct: 62 VQVIEQQLNGIDNLRYVSSDSNSDGSMTITVTFNQGTNPDIAQVQVQNKLNLATPLLPQE 121
Query: 124 VTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMG 183
V + GI V K+ + MV+ L S D LSNY + NI+D ++R GVGD Q+FG
Sbjct: 122 VQQQGIRVTKSVKNFLMVIGLVSEDGSMTKDDLSNYIVSNIQDPISRTAGVGDFQVFG-S 180
Query: 184 DYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRL 243
Y++R+WLDP+K + LT DV AI QN QVA GQLG PA T +I + RL
Sbjct: 181 QYAMRIWLDPSKLNNYQLTPVDVSTAISAQNVQVATGQLGGLPALPGTQLNATIIGKTRL 240
Query: 244 VNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGSNAI 303
E+F NI+++ DG RLKD+AR+ELG Y++ + N +PA + I G+NA+
Sbjct: 241 QTAEQFGNILMKVNTDGSQVRLKDVARIELGGQNYSIAAQFNGKPASGMAIKLASGANAL 300
Query: 304 EISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILFLQ 363
+ +RA +A+L+ FP GM + YD T V SI VVHTL EA+VLV LV+ LFLQ
Sbjct: 301 DTGKAIRATVAQLEPFFPPGMKAVVPYDTTPVVTESISGVVHTLVEAIVLVFLVMFLFLQ 360
Query: 364 TWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNI 423
+RA+II + VPV L+GTF ++ FGF++N L++FG++LAIG++VDDAIVVVENVER +
Sbjct: 361 NFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMILAIGLLVDDAIVVVENVERVM 420
Query: 424 G-LGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVI 482
L P EAT K+M ++ G ++ ALVL AV +P AF G TG YKQF++TI + +
Sbjct: 421 AEEHLSPKEATVKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMAL 480
Query: 483 SAFNSLTLSPALAAVLLK-----DHHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYV 537
S +L +PAL A +LK H PK F F FNR FDR SY
Sbjct: 481 SVLVALIFTPALCATMLKPIDPEKHGQPKRGF------------FGWFNRTFDRGVLSYE 528
Query: 538 GGVRRVIRSSGIALFVYA-GLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRT 596
GV +I+ A VYA + G+ +L F P F+P +D+ + A Q P ++ +RT
Sbjct: 529 RGVGNMIKHKIPAFLVYALVIAGMIWL-FMRIPAAFLPDEDQGVIFAQVQTPVGSTAERT 587
Query: 597 EAVIKRMSEIALK----QPGVADSVAFPGLSINGFT---NSPNSGIVFTPLKPFDERKDP 649
+ VI M L +PG V ++NGF +SG+ F LKP+DER D
Sbjct: 588 QKVIDDMRIFLLNDKEGEPGEGKGVK-SVFTVNGFNFAGRGQSSGLAFVMLKPWDER-DA 645
Query: 650 SQSAAAIAAALNAQFAD-IQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKET 708
S S IA F +DA + PP V LG GF + ++D+G +G++ L
Sbjct: 646 STSVFEIAKRAQGYFMQTFKDAMVFAIVPPSVLELGNATGFDVFLQDQGGVGHDKLMAAR 705
Query: 709 QNIIAKSHNVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTN 768
+ + LAG+ + + PQ + +D EKA G+ ++ I TL + LG Y N
Sbjct: 706 NQFLGMAAQSKILAGVRPNGVNDEPQYELTVDDEKASAQGITLSSINQTLAIALGGSYVN 765
Query: 769 DFNRFGRTYQVNVQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYN 828
DF GR +V VQ E R+ E + + VR++ G+M+PL+ G ++ YN
Sbjct: 766 DFIDRGRVKKVYVQGEAASRMSPEDLNKWYVRSDSGKMVPLSAIASGKWIFGSPKLSRYN 825
Query: 829 GFITAEINGAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPL 888
G EI G APGYS+G A A +E++ K +LP G+ + WT L+Y++ LSG+ A ++ L
Sbjct: 826 GVAAMEILGTPAPGYSTGDAMAEVERIAK-QLPAGIGYAWTGLSYEERLSGSQAPALYAL 884
Query: 889 CVLLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLAC 948
+L+ FL LAA YESWS+P+AVIL+VP+ ++ A+ + G N++F Q+GL+V VGLA
Sbjct: 885 SLLVVFLCLAALYESWSIPIAVILVVPLGVVGALIATSMRGLSNDVFFQVGLLVTVGLAA 944
Query: 949 KNAILIVEFAKDEQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMR 1008
KNAILIVEFAK+ +G + A +EA R+RLRPI+MTS+AFI+GV+PL SSGAGS +
Sbjct: 945 KNAILIVEFAKELHEQGKGIVEAAIEASRMRLRPIIMTSMAFILGVLPLAISSGAGSGSQ 1004
Query: 1009 HAMGVAVFSGMIGVTVFGLFLTPVFFFLIRRFVERRQARKAE 1050
HA+G V GMI TV +F P+FF + ER++ E
Sbjct: 1005 HAIGTGVIGGMITATVLAIFWVPLFFATVSAAGERKKTDTTE 1046