Pairwise Alignments
Query, 1059 a.a., Multidrug efflux RND transporter MexF from Pseudomonas putida KT2440
Subject, 1045 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45
Score = 784 bits (2024), Expect = 0.0
Identities = 439/1059 (41%), Positives = 652/1059 (61%), Gaps = 28/1059 (2%)
Query: 4 SKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETV 63
++FFI RPIFA V+++V+++AG++S+ LP+ +YP++ P V + A + GA+ K I ++V
Sbjct: 2 ARFFIDRPIFAWVIAIVIMLAGALSIGTLPLEQYPDIAPTKVSINATYTGASAKTIEDSV 61
Query: 64 AAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKLPEE 123
+EQ + G++ ++ MSS ST+ G + +TF GT+ D AQ+QVQN++ + Q +LP+
Sbjct: 62 TQVIEQKMKGLDRLVSMSSSSTSSGTARIELTFEAGTNADVAQMQVQNKLQQAQSQLPQS 121
Query: 124 VTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMG 183
V G+TV K+ D M+V L S D + +Y ++ D ++R+ GVGDVQ G G
Sbjct: 122 VQSQGVTVTKSGTDFLMIVSLISQDGSATATDIGDYISSSLLDVISRIDGVGDVQTLGSG 181
Query: 184 DYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRL 243
Y++R+WLDP K +L SDV +A+ QN +V+AGQLGA PA +I + +L
Sbjct: 182 -YAMRIWLDPAKLQKYSLMPSDVSSALTSQNTEVSAGQLGALPATAGQRLTATITARSKL 240
Query: 244 VNEEEFENIIIRA-GADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGSNA 302
++F +I+++ + G I RL D+AR+ELGS Y + S + P+ + + G+NA
Sbjct: 241 RTADQFREVIVKSDSSSGAIVRLGDVARIELGSESYTINSHFDGHPSAGMGVKLATGANA 300
Query: 303 IEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILFL 362
+ +S+ V+AK+AEL FP M + YD T FVR SIE V TL EA+VLVVL++ LFL
Sbjct: 301 LTVSNAVKAKLAELSPFFPNQMKAVVGYDTTPFVRISIEEVAKTLAEAMVLVVLIMYLFL 360
Query: 363 QTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERN 422
Q RA+++P +AVPV L+GTF V+ L G+S+N L++FG+VLAIG++VDDAIVVVENVER
Sbjct: 361 QNLRATLVPAIAVPVVLLGTFGVLSLLGYSINTLTMFGMVLAIGLLVDDAIVVVENVERL 420
Query: 423 IGL-GLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTV 481
+ GL P EAT+K+MSE+TG ++ ALVL AVF+P AF G TG Y+QF++TI + +
Sbjct: 421 MTEEGLSPKEATRKSMSEITGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSVTIVAAML 480
Query: 482 ISAFNSLTLSPALAAVLLKD----HHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYV 537
+S +LTLSPAL A LLK HH K F F FNR F+R + Y
Sbjct: 481 LSVLVALTLSPALCATLLKPVQAGHHEEKRGF------------FGWFNRTFERNAERYR 528
Query: 538 GGVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTE 597
GV ++ +L VYA L+G+ + F PT F+P +D+ L+A +LP +A+ ++ +
Sbjct: 529 SGVGGLLHRGKRSLLVYALLVGVLGMTFMRLPTSFLPDEDQGTLMAQVKLPASATDEQLQ 588
Query: 598 AVIKRMSEIALKQPGVADSVAFPGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAAIA 657
+K + Q V+ + GLS + T G F LK + ER +Q AA++A
Sbjct: 589 QTMKSFEQYLSSQKEVSHYITLTGLSGDQAT-----GNAFITLKDWRERGGKAQDAASLA 643
Query: 658 AALNAQFAD-IQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIAKSH 716
A +A + + PP V+GLG+ GF +Q++D G +G+EAL + + +A +
Sbjct: 644 RRFTMDMATRASNANVFVMLPPAVRGLGSNAGFDVQLQDLGGIGHEALVQAREQFLALAR 703
Query: 717 NVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGRT 776
P L+ + ++ + PQ ID KA ++ +DI DTL +G Y NDF GR
Sbjct: 704 KDPALSQVRSNNLDDTPQFSIDIDDRKAAALNLSTSDINDTLSSAMGGSYVNDFINNGRV 763
Query: 777 YQVNVQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEIN 836
+V VQA+ FR+ + + + VRN EM+P + F T G ++ YNG + E+
Sbjct: 764 KKVYVQADAPFRMQPDSVDRWHVRNANSEMVPFSAFASSRWTYGSPQLSRYNGMSSFELI 823
Query: 837 GAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFLV 896
G A G SSG A A+E+++K+ LP G+ +EW +YQ+ LSG+ A L++ + +L FL
Sbjct: 824 GDPAAGVSSGTAMDAVERIMKQ-LPQGIGYEWAGSSYQERLSGSQAPLLYAVSILFVFLC 882
Query: 897 LAAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVE 956
LAA YESWS+P +V+L+VP+ +L A+ ++G N+++ Q+GL+ VGL+ KNAILIVE
Sbjct: 883 LAALYESWSVPFSVMLVVPLGVLGAVLATKLAGLSNDVYFQVGLLATVGLSAKNAILIVE 942
Query: 957 FAKDEQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVAVF 1016
FAK Q +G+ + A L+A RLRLRPILMTS+AF+ GV+PL S+GAGS R A+GV V
Sbjct: 943 FAKQLQDEGMALVEATLQAVRLRLRPILMTSLAFMFGVLPLALSTGAGSGSRRAIGVGVL 1002
Query: 1017 SGMIGVTVFGLFLTPVFFFLIRRFVERRQARKAEHAQVL 1055
G+ TV G+F P+FF IRRF +R +KA A VL
Sbjct: 1003 GGIATATVLGIFFVPLFFVAIRRFFAQR--KKAPAAPVL 1039