Pairwise Alignments

Query, 1059 a.a., Multidrug efflux RND transporter MexF from Pseudomonas putida KT2440

Subject, 1089 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score = 1392 bits (3602), Expect = 0.0
 Identities = 701/1044 (67%), Positives = 840/1044 (80%), Gaps = 1/1044 (0%)

Query: 1    MNFSKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIG 60
            MN SKFFI RPIFA VLSL++LIAG I+L  LPISEYPEV PP+VVVRA +PGANPKVI 
Sbjct: 1    MNLSKFFIDRPIFAGVLSLLMLIAGLIALRGLPISEYPEVAPPSVVVRAQYPGANPKVIA 60

Query: 61   ETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKL 120
            ETVA PLE+ I GVE MLYM SQ+T DG LTLT+TF LGTD D AQ  VQNRV++ +P+L
Sbjct: 61   ETVATPLEEQINGVEGMLYMGSQATTDGVLTLTVTFRLGTDPDKAQQLVQNRVSQAEPRL 120

Query: 121  PEEVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLF 180
            PEEV R+GIT  K++PDLTMVVHL SP+NRYD+ YL NYA+LN+KD LAR+ GVG VQ+F
Sbjct: 121  PEEVRRLGITTVKSAPDLTMVVHLVSPNNRYDINYLRNYAVLNVKDPLARIEGVGQVQIF 180

Query: 181  GMGDYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQ 240
            G GDYS+RVWLDP K A R L+ASDVVAAIR QN Q AAG +GA P       QLSIN Q
Sbjct: 181  GGGDYSMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLSGVDMQLSINAQ 240

Query: 241  GRLVNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS 300
            GRL +EEEF +II+++G DG +TRL+DI R+E+G++ Y+LRSLLNN PAV + +FQ PGS
Sbjct: 241  GRLQSEEEFGDIIVKSGTDGAVTRLRDIGRLEMGAADYSLRSLLNNDPAVGMGVFQAPGS 300

Query: 301  NAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVIL 360
            NA++IS  VR  M EL K+ PEG++Y I YDPT FVR SIE+V+HTL EA++LVVLVVIL
Sbjct: 301  NALDISANVRKTMEELNKNMPEGLEYRIAYDPTQFVRASIESVIHTLLEAIMLVVLVVIL 360

Query: 361  FLQTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVE 420
            FLQTWRASIIPLLAVPVS+IGTFAV+H+ GFS+NALSLFGLVLAIGIVVDDAIVVVENVE
Sbjct: 361  FLQTWRASIIPLLAVPVSVIGTFAVLHVLGFSINALSLFGLVLAIGIVVDDAIVVVENVE 420

Query: 421  RNIGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAIST 480
            RNI  GL P EAT +AM EV+GPIIA ALVL AVFVP AFISGLTGQFY+QFA+TIAIST
Sbjct: 421  RNIEAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAIST 480

Query: 481  VISAFNSLTLSPALAAVLLKDHHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYVGGV 540
            VISA NSLTLSPALAA+LL+ H  PKD  +R +D+  G WLF  FN+ F R S +Y GGV
Sbjct: 481  VISAINSLTLSPALAALLLRGHDQPKDALTRGMDRAFG-WLFRGFNKLFHRGSEAYSGGV 539

Query: 541  RRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEAVI 600
            + VI    + L +Y  L+ +T+  F + P GFVPAQDKQYL+ FAQLPD A+LDRT+ VI
Sbjct: 540  KNVISRKALMLAIYVALIAVTFGLFKAVPGGFVPAQDKQYLIGFAQLPDGATLDRTDEVI 599

Query: 601  KRMSEIALKQPGVADSVAFPGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAAIAAAL 660
            +RM EI  K P V D++AFPGLSINGFTNS NSGIVF  LKPFD+RK P QS  A+A  L
Sbjct: 600  QRMGEIMKKNPNVEDAIAFPGLSINGFTNSSNSGIVFATLKPFDQRKRPDQSGGAVAGQL 659

Query: 661  NAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIAKSHNVPE 720
            N  FA IQDA+I +FPPPPV GLGT GGF+LQ+EDR ++GY+ +    +  +AK+   PE
Sbjct: 660  NGAFAGIQDAFIVMFPPPPVAGLGTTGGFKLQLEDRASVGYDQMDAAVKAFMAKAQQAPE 719

Query: 721  LAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGRTYQVN 780
            LAG+FTS+QVNVPQ+ A IDR KA+  GV +TDIFDT+Q+YLGSLY NDFN+FGRTY V 
Sbjct: 720  LAGMFTSWQVNVPQLYADIDRTKARQLGVPVTDIFDTMQIYLGSLYANDFNKFGRTYSVR 779

Query: 781  VQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEINGAAA 840
            VQA+  +R  AE +G LKVR+  GEM+PL+  +KV+ T GP+R M YNG++ A+ING  A
Sbjct: 780  VQADAPYRARAEDVGLLKVRSTSGEMVPLSALMKVNSTFGPERAMRYNGYLAADINGGPA 839

Query: 841  PGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFLVLAAQ 900
            PGYSSGQA+ AI K+  E LP G++FEWT+LTYQ+IL+GN+A LVFPL +LL FLVLAAQ
Sbjct: 840  PGYSSGQAQDAITKIAAETLPKGVSFEWTELTYQEILAGNSAFLVFPLAILLVFLVLAAQ 899

Query: 901  YESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKD 960
            YES +LP+A+ILIVPM +++A+ GV +SGGDNN+FTQIGLIVLVGL+ KNAILIVEFA++
Sbjct: 900  YESLTLPIAIILIVPMGIMAAMAGVWISGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE 959

Query: 961  EQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVAVFSGMI 1020
             +  G  P+ A +EA RLRLRPILMTS+AF+MGV+PLV S+GAGSEMR AMGVAVF+GMI
Sbjct: 960  LEFAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGSEMRKAMGVAVFAGMI 1019

Query: 1021 GVTVFGLFLTPVFFFLIRRFVERR 1044
            GVT FGLFLTPVF+ L+RR    R
Sbjct: 1020 GVTAFGLFLTPVFYVLLRRLAGNR 1043