Pairwise Alignments

Query, 1059 a.a., Multidrug efflux RND transporter MexF from Pseudomonas putida KT2440

Subject, 1062 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

 Score = 1041 bits (2692), Expect = 0.0
 Identities = 537/1061 (50%), Positives = 729/1061 (68%), Gaps = 7/1061 (0%)

Query: 1    MNFSKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIG 60
            M FS+FFI RPIFAAV+++V+ + G+++   LP+S+YP++VPPTV V A +PGA+ + + 
Sbjct: 1    MRFSRFFIDRPIFAAVIAVVITVVGALAFVGLPVSQYPDIVPPTVTVSAQYPGASAETVA 60

Query: 61   ETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKL 120
             TVAAP+EQ I GV++MLY SSQST DGK+ +T+TF +GTDLD AQV VQNRV    P+L
Sbjct: 61   STVAAPIEQEINGVDDMLYQSSQSTGDGKVVITVTFKIGTDLDAAQVLVQNRVAVAIPRL 120

Query: 121  PEEVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLF 180
            PEEV R+G+   K +P+  MVV+L SPD  YD  Y+SNYA+  ++D LARL GVGDVQLF
Sbjct: 121  PEEVQRLGVVTRKTTPEFLMVVNLQSPDGTYDRDYISNYALTQVRDRLARLDGVGDVQLF 180

Query: 181  GMGDYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQ 240
            G  DY++R+W+DP++ A+ +LTA ++V+A+R QN QV+AG +G PP     +FQL +  Q
Sbjct: 181  GSRDYAMRIWIDPDRAAALDLTAGEIVSALRAQNVQVSAGSIGQPPYDRGEAFQLGVEMQ 240

Query: 241  GRLVNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS 300
            GRL   ++F +I+IR+ ADG   R++D+ARVELG+  Y   + L+N+P V I   QRPGS
Sbjct: 241  GRLTTPDQFSDIVIRSDADGHQVRVRDVARVELGAQDYGTNTYLSNKPTVVIATMQRPGS 300

Query: 301  NAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVIL 360
            NA++ +++V+A+M +L K FP+G++YSI+Y+PT F+  SI+AV HTLFEA++LVV+V+++
Sbjct: 301  NALDAAEKVKAEMEQLSKRFPKGLEYSIIYNPTEFISQSIDAVYHTLFEAVILVVIVILI 360

Query: 361  FLQTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVE 420
            FLQ WRA++IP++A+PVSLIGT  ++   G+SLN LSLFGLVLAIGIVVDDAIVVVENVE
Sbjct: 361  FLQNWRAAVIPIIAIPVSLIGTATMLAAVGYSLNNLSLFGLVLAIGIVVDDAIVVVENVE 420

Query: 421  RNIGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAIST 480
            RNI  G+ PL+A + +M EV+  +IA  LVLCAVFVP  FI+G++G FY+QFA+TI+ +T
Sbjct: 421  RNIENGMSPLQAARVSMDEVSTALIAIVLVLCAVFVPTLFITGISGAFYQQFAVTISTAT 480

Query: 481  VISAFNSLTLSPALAAVLLKDHHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYVGGV 540
            VIS   SLTLSPA AA+LLK  H   D  +    + + +     FN+ FDR S  Y    
Sbjct: 481  VISLILSLTLSPAAAALLLKSKHGAHDLDNAPRWRQVAAKAADRFNQGFDRMSAGYARLT 540

Query: 541  RRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEAVI 600
            R ++      L  YAGL+  T   F  TP GF+PAQD+ Y +A  QLP  ASL+RT+ V 
Sbjct: 541  RFLVARPKKMLLTYAGLIAATIALFWVTPGGFIPAQDQGYFLAVVQLPSGASLERTDKVT 600

Query: 601  KRMSEIALKQPGVADSVAFPGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAAIAAAL 660
            + ++   L   G+  +V F G      T +PNS  ++ P K F ERK    + A I    
Sbjct: 601  REVAAKILPIKGLRGAVMFAGFHGPSQTQAPNSAAIYFPFKSFAERKAEGATYAGIMDQA 660

Query: 661  NAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIAKSHNVPE 720
            N   A    A I + PPP +QG+G+ GG+RL +EDR + GY  L K    +I K++  P 
Sbjct: 661  NKAVAGYDKARILLVPPPLIQGIGSAGGYRLMLEDREDRGYAELNKVAGELIGKANQSPS 720

Query: 721  LAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGRTYQVN 780
            LA ++T + V  P++ A +DR KA   GV    +F+ +QVYLGS + NDFN  GRTY+V 
Sbjct: 721  LAQVYTLFDVGTPRIFADVDRRKADLLGVPPERVFEAMQVYLGSAFVNDFNLLGRTYRVT 780

Query: 781  VQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEINGAAA 840
             QA+ + R     I  LK R+N G+M+P+ +     D +GP RV+ YN     EI+G  A
Sbjct: 781  AQADAEHRGTVADIANLKTRSNSGQMVPIGSVSTFRDKTGPYRVVRYNLLPAVEIDGDTA 840

Query: 841  PGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFLVLAAQ 900
            PGYSSGQ+ + +EK L +  P G   EWT + YQQI +GNTA +VF + V   FLVLAAQ
Sbjct: 841  PGYSSGQSLSTMEK-LADAAPAGYASEWTGVAYQQISAGNTAGIVFGMAVFFVFLVLAAQ 899

Query: 901  YESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKD 960
            YES +LPL++ILIVPM L +A+ GV + G DNNI TQIGL+VL+ LA KNAIL+VEFAK 
Sbjct: 900  YESLTLPLSIILIVPMCLFAAMLGVNLRGMDNNILTQIGLVVLIALAAKNAILVVEFAKQ 959

Query: 961  -EQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVAVFSGM 1019
             E+ +GL P+ A ++A + RLRPILMTS AFI+G VPLV +SGAG+E+R A+G AVF GM
Sbjct: 960  AEEEQGLSPVEAAVQAAQTRLRPILMTSFAFILGAVPLVIASGAGAELRQALGTAVFFGM 1019

Query: 1020 IGVTVFGLFLTPVFFFLIR----RFVERRQARKAEHAQVLE 1056
             GVT FGL  TP F+ + R    RF  RR+  +A+ A  L+
Sbjct: 1020 TGVTAFGLLFTPTFYVVCRALGDRFARRRRP-EADDAAALQ 1059