Pairwise Alignments

Query, 1059 a.a., Multidrug efflux RND transporter MexF from Pseudomonas putida KT2440

Subject, 1034 a.a., multidrug efflux system protein (NCBI) from Escherichia coli BW25113

 Score =  796 bits (2055), Expect = 0.0
 Identities = 435/1046 (41%), Positives = 648/1046 (61%), Gaps = 27/1046 (2%)

Query: 4    SKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETV 63
            + FFI RPIFA VL+++L++AG++++ QLP+++YP + PP V V AN+PGA+ + + +TV
Sbjct: 2    ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61

Query: 64   AAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKLPEE 123
               +EQ + G++N++YMSS S + G +T+T+TF  GTD D AQVQVQN++    P LP+E
Sbjct: 62   TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121

Query: 124  VTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMG 183
            V + GI+V+K+S    MV    S +       +S+Y   N+KD L+RL GVGDVQLFG  
Sbjct: 122  VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-A 180

Query: 184  DYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRL 243
             Y++R+WLD +      LT  DV+  ++ QN Q+AAGQLG  PA        SI  Q R 
Sbjct: 181  QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240

Query: 244  VNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGSNAI 303
             N EEF  + +R  +DG + RLKD+ARVELG   Y + + +N +PA  + I    G+NA+
Sbjct: 241  KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300

Query: 304  EISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILFLQ 363
            + +  ++AK+AEL+  FP+GM     YD T FV+ SI  VV TLFEA++LV LV+ LFLQ
Sbjct: 301  DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360

Query: 364  TWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVER-N 422
              RA++IP +AVPV L+GTFA++  FG+S+N L++FG+VLAIG++VDDAIVVVENVER  
Sbjct: 361  NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 423  IGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVI 482
            +   L P EAT+K+MS++ G ++  A+VL AVF+P AF  G TG  Y+QF++TI  +  +
Sbjct: 421  MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480

Query: 483  SAFNSLTLSPALAAVLLK----DHHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYVG 538
            S   +L L+PAL A LLK    +HH  K  F            F  FN  FD + + Y  
Sbjct: 481  SVLVALILTPALCATLLKPVSAEHHENKGGF------------FGWFNTTFDHSVNHYTN 528

Query: 539  GVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEA 598
             V +++ S+G  L +YA ++    + F   P+ F+P +D+   +   QLP  A+ +RT+ 
Sbjct: 529  SVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK 588

Query: 599  VIKRMSEIALKQPGVADSVAFPGLSINGFT---NSPNSGIVFTPLKPFDERKDPSQSAAA 655
            V+ ++++  LK         F   ++NGF+    + N+G+ F  LKP++ER     SA A
Sbjct: 589  VLDQVTDYYLKNEKANVESVF---TVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEA 645

Query: 656  IAAALNAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIAKS 715
            +      +   I+D ++  F  P +  LGT  GF  ++ D+  LG++AL +    ++  +
Sbjct: 646  VIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMA 705

Query: 716  HNVP-ELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFG 774
               P  L  +  +   +  Q    +D+EKA+  GV+++DI  T+   LG  Y NDF   G
Sbjct: 706  AQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG 765

Query: 775  RTYQVNVQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAE 834
            R  ++ VQA+ +FR+  E + +L VR+  GEM+P + F       G  R+  YNG  + E
Sbjct: 766  RVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSME 825

Query: 835  INGAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAF 894
            I G AAPG SSG A A +E  L  +LP G+ ++WT ++YQ+ LSGN A  +  +  ++ F
Sbjct: 826  IQGEAAPGTSSGDAMALMEN-LASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVF 884

Query: 895  LVLAAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILI 954
            L LAA YESWS+P++V+L+VP+ ++  +    +    N+++  +GL+  +GL+ KNAILI
Sbjct: 885  LCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILI 944

Query: 955  VEFAKDEQAK-GLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGV 1013
            VEFAKD   K G   + A L A R+RLRPILMTS+AFI+GV+PL  S+GAGS  ++A+G+
Sbjct: 945  VEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGI 1004

Query: 1014 AVFSGMIGVTVFGLFLTPVFFFLIRR 1039
             V  GM+  T+  +F  PVFF +IRR
Sbjct: 1005 GVMGGMVSATLLAIFFVPVFFVVIRR 1030