Pairwise Alignments

Query, 1059 a.a., Multidrug efflux RND transporter MexF from Pseudomonas putida KT2440

Subject, 1037 a.a., aminoglycoside/multidrug efflux system from Escherichia coli BL21

 Score =  776 bits (2005), Expect = 0.0
 Identities = 424/1044 (40%), Positives = 630/1044 (60%), Gaps = 25/1044 (2%)

Query: 4    SKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETV 63
            + FFI RPIFA VL+++L + G++++F LP+ +YP++ PP V V AN+PGA+ + +  TV
Sbjct: 2    ANFFIDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRVTANYPGASAQTLENTV 61

Query: 64   AAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKLPEE 123
               +EQ +TG++N++YMSSQS+  G+ ++T++F  GTD D A  QVQN++     KLP+ 
Sbjct: 62   TQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQA 121

Query: 124  VTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMG 183
            V   G+TV K      + +   S D   D   +++Y   NI+D L+R+ GVGD+  +G  
Sbjct: 122  VQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYG-S 180

Query: 184  DYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRL 243
             YS+R+WLDP K  S  +TA DV  AI  QN Q+A GQLG  P+    +   +IN Q  L
Sbjct: 181  QYSMRIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSLL 240

Query: 244  VNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGSNAI 303
               E+F +I +R   DG   RL D+A VE+G+ +Y   S  N +PA  + +    G+N +
Sbjct: 241  QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEM 300

Query: 304  EISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILFLQ 363
              ++ V  ++ EL + FP G++Y + Y+ T FV+ SIE VV TL EA+ LV LV+ LFLQ
Sbjct: 301  ATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQ 360

Query: 364  TWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNI 423
             +RA++IP +AVPV L+GTF+V++ FG+S+N L++F +VLAIG++VDDAIVVVENVER +
Sbjct: 361  NFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENVERIM 420

Query: 424  G-LGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVI 482
               GL P EAT+K+M ++ G ++  A+VL AVFVP AF  G TG  Y+QF++TI  + V+
Sbjct: 421  SEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVL 480

Query: 483  SAFNSLTLSPALAAVLLK-----DHHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYV 537
            S   ++ L+PAL A LLK     +HH  K  F         +W    FN+ F+R +  Y 
Sbjct: 481  SVLVAMILTPALCATLLKPLKKGEHHGQKGFF---------AW----FNQMFNRNAERYE 527

Query: 538  GGVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTE 597
             GV +++  S   + +Y  L+G     F   PT F+P +D+       QLP  ++  +T 
Sbjct: 528  KGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTL 587

Query: 598  AVIKRMSE--IALKQPGVADSVAFPGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAA 655
             V++++ +     ++  +    A  G    G  N  N   +F  LK + ER   + ++ A
Sbjct: 588  KVVEQIEKYYFTHEKDNIMSVFATVGSGPGG--NGQNVARMFIRLKDWSERDSKTGTSFA 645

Query: 656  IAAALNAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIAKS 715
            I       F  I++A +    PP + GLG+  GF ++++D    G++AL      ++A +
Sbjct: 646  IIERATKAFNQIKEARVIASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARNQLLALA 705

Query: 716  HNVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGR 775
               PEL  +  +   + PQ+   ID+ KA+  GVAI DI DTLQ   GS Y NDF   GR
Sbjct: 706  AENPELTRVRHNGLDDSPQLQIDIDQRKAQALGVAIDDINDTLQTAWGSSYVNDFMDRGR 765

Query: 776  TYQVNVQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEI 835
              +V VQA   +R+  + I    VRN  G M+P + F      +G  R+  YNG+   EI
Sbjct: 766  VKKVYVQAAAPYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEI 825

Query: 836  NGAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFL 895
             G AAPG S+G A   +E L+K +LPNG   EWT ++YQ+ LSG  A  ++ + +L+ FL
Sbjct: 826  VGEAAPGVSTGTAMDIMESLVK-QLPNGFGLEWTAMSYQERLSGAQAPALYAISLLVVFL 884

Query: 896  VLAAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIV 955
             LAA YESWS+P +V+L+VP+ ++ A+    + G +N+++ Q+GL+ ++GL+ KNAILIV
Sbjct: 885  CLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIV 944

Query: 956  EFAKDEQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVAV 1015
            EFA +   KG D   A L ACR RLRPILMTS+AFI GV+P+  S+GAGS  +HA+G  V
Sbjct: 945  EFANEMNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGAGSGGQHAVGTGV 1004

Query: 1016 FSGMIGVTVFGLFLTPVFFFLIRR 1039
              GMI  T+  ++  P+FF L+RR
Sbjct: 1005 MGGMISATILAIYFVPLFFVLVRR 1028